Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BA893_RS18815 Genome accession   NZ_CP016350
Coordinates   616883..617980 (+) Length   365 a.a.
NCBI ID   WP_065300812.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 611883..622980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS18790 (BA893_18790) - 613092..614429 (-) 1338 WP_065300810.1 MATE family efflux transporter -
  BA893_RS18795 (BA893_18795) - 614562..614876 (-) 315 WP_014233767.1 DUF496 family protein -
  BA893_RS18800 (BA893_18800) - 615268..615471 (+) 204 WP_231113092.1 hypothetical protein -
  BA893_RS18805 (BA893_18805) - 615629..616273 (+) 645 WP_065300811.1 YceH family protein -
  BA893_RS18810 (BA893_18810) - 616273..616587 (+) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  BA893_RS18815 (BA893_18815) luxP 616883..617980 (+) 1098 WP_065300812.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BA893_RS18820 (BA893_18820) luxQ 617980..620553 (+) 2574 WP_065300813.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  BA893_RS18825 (BA893_18825) - 620728..621183 (+) 456 WP_014233773.1 MarR family transcriptional regulator -
  BA893_RS18830 (BA893_18830) - 621217..622275 (+) 1059 WP_065300814.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41606.92 Da        Isoelectric Point: 5.1880

>NTDB_id=187237 BA893_RS18815 WP_065300812.1 616883..617980(+) (luxP) [Vibrio natriegens strain CCUG 16373]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQKQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILDGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=187237 BA893_RS18815 WP_065300812.1 616883..617980(+) (luxP) [Vibrio natriegens strain CCUG 16373]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAAGCAACTAACCAACGCACTGGCTGAAGCTGTTAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCAGTCGTTTACCCAGGGCAGCAAATCTCAGAT
TACTGGATCAGAAATATTGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
CCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTTTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACACCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCCCAAAATACTCATTACAGTGTGCTTTACTTTTCAGAAGGCTACATTAGTGATG
TAAGAGGGAATACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGATTTTATTTATGCTTGCTCAACAGA
CGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAGATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACTGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment