Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9P13_RS00480 Genome accession   NZ_CP020516
Coordinates   104855..105523 (+) Length   222 a.a.
NCBI ID   WP_001521609.1    Uniprot ID   -
Organism   Escherichia coli strain 222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99855..110523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P13_RS00445 (A9P13_00455) yicC 99874..100737 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  A9P13_RS00455 (A9P13_00465) rph 100864..101580 (+) 717 WP_001247093.1 ribonuclease PH -
  A9P13_RS00460 (A9P13_00470) pyrE 101646..102287 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  A9P13_RS00465 (A9P13_00475) slmA 102324..102920 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A9P13_RS00470 (A9P13_00480) dut 103027..103485 (-) 459 WP_000976070.1 dUTP diphosphatase -
  A9P13_RS00475 (A9P13_00485) coaBC 103463..104683 (-) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9P13_RS00480 (A9P13_00490) radC 104855..105523 (+) 669 WP_001521609.1 DNA repair protein RadC Machinery gene
  A9P13_RS00485 (A9P13_00495) rpmB 105740..105976 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  A9P13_RS00490 (A9P13_00500) rpmG 105997..106164 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  A9P13_RS00495 (A9P13_00505) mutM 106262..107071 (+) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A9P13_RS00500 (A9P13_00510) coaD 107110..107589 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A9P13_RS00505 (A9P13_00515) waaA 107597..108874 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A9P13_RS00510 (A9P13_00520) rfaQ 109287..110345 (+) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25304.44 Da        Isoelectric Point: 7.8777

>NTDB_id=187230 A9P13_RS00480 WP_001521609.1 104855..105523(+) (radC) [Escherichia coli strain 222]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSCVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=187230 A9P13_RS00480 WP_001521609.1 104855..105523(+) (radC) [Escherichia coli strain 222]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTTGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496