Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BA893_RS13115 Genome accession   NZ_CP016349
Coordinates   2902450..2902968 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens strain CCUG 16373     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897450..2907968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS13090 (BA893_13090) rimM 2897532..2898080 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  BA893_RS13095 (BA893_13095) rpsP 2898111..2898359 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  BA893_RS13100 (BA893_13100) ffh 2898568..2899950 (-) 1383 WP_014232959.1 signal recognition particle protein -
  BA893_RS13105 (BA893_13105) - 2900175..2900969 (+) 795 WP_014232960.1 cytochrome C assembly family protein -
  BA893_RS13110 (BA893_13110) - 2901088..2902365 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  BA893_RS13115 (BA893_13115) luxS 2902450..2902968 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  BA893_RS13120 (BA893_13120) - 2903038..2903643 (-) 606 WP_196769700.1 hypothetical protein -
  BA893_RS13125 (BA893_13125) gshA 2903668..2905236 (-) 1569 WP_065300190.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=187216 BA893_RS13115 WP_014232962.1 2902450..2902968(-) (luxS) [Vibrio natriegens strain CCUG 16373]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=187216 BA893_RS13115 WP_014232962.1 2902450..2902968(-) (luxS) [Vibrio natriegens strain CCUG 16373]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAGCAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment