Detailed information NTG0187210

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: BA893_RS12825
• Genome accession: NZ_CP016349
• Coordinates: 2828989..2832375 (+)
• Length: 1128 a.a.
• NCBI ID: WP_065300161.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain CCUG 16373
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2823989..2837375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA893_RS12805 (BA893_12805)	erpA	2824356..2824697 (-)	342	WP_014232903.1	iron-sulfur cluster insertion protein ErpA	-
BA893_RS12810 (BA893_12810)	hemL	2824940..2826235 (+)	1296	WP_014232904.1	glutamate-1-semialdehyde 2,1-aminomutase	-
BA893_RS12815 (BA893_12815)	-	2826575..2827660 (+)	1086	WP_065300159.1	AI-2E family transporter	-
BA893_RS12820 (BA893_12820)	rsmC	2827737..2828762 (+)	1026	WP_065300160.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
BA893_RS25325	-	2828736..2828990 (-)	255	WP_231113027.1	hypothetical protein	-
BA893_RS12825 (BA893_12825)	chiS	2828989..2832375 (+)	3387	WP_065300161.1	response regulator	Regulator
BA893_RS12830 (BA893_12830)	-	2833251..2834933 (+)	1683	WP_065300162.1	ABC transporter substrate-binding protein	-
BA893_RS12835 (BA893_12835)	-	2835105..2836091 (+)	987	WP_065300163.1	ABC transporter permease	-
BA893_RS12840 (BA893_12840)	-	2836094..2837119 (+)	1026	WP_014232911.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127419.07 Da
• Isoelectric Point: 5.5117

>NTDB_id=187210 BA893_RS12825 WP_065300161.1 2828989..2832375(+) (chiS) [Vibrio natriegens strain CCUG 16373]
MFKFYKKQKFKRLQSTLMTAFLVLSLTPLTITALFFLQSHSQDLQEQSTSHLLSVRDTKQQQIIDYFEARETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEESRQNAQQRYIEGSGDQTKTSILPESSNFVGSERYRLLHKRYHWAYSELLKRSDF
NDILLVDINGNVTYSIKKDDNYGTNLLTGRYKDAALGRAFQRLANDVSERRKVNEDYTPILISDFELENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLVADKNRESSIETLLVGGDQQPRTINTKLDDIQNSMEVITQALSGQTSVGTYTNGLDEA
IIAAYAPVKTRGVNWALVVQLPEKDAFSRIHQLEKLFVIAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
NTFDTVRKDEIGRLAISFERMQRSIREKIQTIKKQNEELESNIRLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLISGANGTIPANQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVNLASSTRLVLELSGHLLGNKTIRI
INQVPNDLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAGVVDDLVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDES
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEILATQTQAACGHFQVPEINLENTDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCNELRQTFDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIRAHLTASKAEMRHIENKVLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRVRFANEAACKLFKRSLEQIKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANTARIHNLETAVEVLSRYAFDGDKEQLQKLKELGGEFTRLADKALGNKKDKQEVMREVLVEAMTHA
LEYWESVTGESKFTFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=187210 BA893_RS12825 WP_065300161.1 2828989..2832375(+) (chiS) [Vibrio natriegens strain CCUG 16373]
ATGTTCAAATTCTACAAAAAACAGAAGTTTAAGCGTCTACAAAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCCTTAC
GCCTCTAACCATTACCGCGCTTTTTTTCCTGCAGTCACACAGTCAAGATCTGCAAGAACAGAGCACGTCACACCTGCTGT
CTGTACGAGATACCAAACAGCAGCAAATTATTGACTATTTTGAAGCACGCGAAACCGAAGTAATGGGCTTTGTCCGTTCG
GAGTTAGCTTATGCCAGCGGTGGACGCTTTTATGGTTTAGTCAATGCGTTCAGTCGCTTAGGAAACGACATTGAAGAGTC
ACGTCAAAATGCACAGCAACGTTATATTGAAGGCAGTGGCGATCAGACAAAAACGTCAATCTTGCCGGAGTCATCTAACT
TTGTCGGGAGCGAGCGTTATCGCCTGTTACACAAGCGCTATCATTGGGCTTATTCAGAACTTCTAAAACGCTCTGACTTC
AATGACATACTTTTAGTCGATATCAACGGTAACGTTACTTACTCAATCAAAAAAGACGACAATTACGGCACTAATCTTCT
CACTGGCCGCTATAAAGATGCTGCGCTAGGTAGAGCGTTTCAGCGCTTGGCCAATGATGTCAGCGAGCGCCGTAAAGTAA
ACGAAGACTATACTCCAATCCTTATCTCTGACTTTGAACTTGAAAATGGCAAGCAAGTCGCGTGGCTTGGCGCTCCTATC
GTTCAACAAGGATATCTCCATAGCTATGCCATGTTCCGATTGCCAAATAACGGCATCACAAAGCTAGTCGCAGACAAAAA
CCGCGAGTCATCGATTGAGACGCTATTAGTCGGAGGAGATCAACAACCTCGAACCATTAACACCAAGCTAGATGATATCC
AAAACAGTATGGAGGTCATCACTCAGGCACTTTCAGGTCAAACGAGCGTAGGTACTTATACAAACGGGCTCGATGAAGCC
ATTATCGCCGCCTATGCGCCAGTTAAAACCCGTGGTGTGAATTGGGCGTTGGTCGTGCAGTTACCAGAAAAAGACGCCTT
TTCTCGCATTCACCAGCTGGAAAAACTCTTCGTCATTGCGATGCTTACGGCGATCATACTGGTTGTGATTGCCTCGCACT
ATTTATCGAATTTCATCACCTCGCCACTGCTTAAATTAACCTGGGCGGCAGAGCGAGTATCAGCAGGCGATCTGGACGAA
AACACATTTGATACTGTTAGAAAAGACGAAATTGGTCGCTTAGCCATCAGTTTTGAGCGCATGCAACGTTCCATTCGTGA
AAAAATTCAGACTATCAAGAAGCAAAATGAAGAGCTGGAAAGCAACATCCGCTTAATTCAAAAACAAAATGACGAGCTGC
AACTGGCAGACAAACTAAAAGATGAGTTTCTGGCAACGACCTCTCATGAACTGCGTACGCCTTTGCACGGCATGGTCGGT
ATTGCAGAAACCTTGATATCTGGAGCCAACGGTACAATTCCGGCAAACCAGAAGTATCAGCTTGATATAATTATTAAAAG
TGGCCAACGTTTGGCTAACCTGGTCGACGACTTACTGGATTACCATAAAATGCGATATGGTAGCATGGACATCCAGAAGT
CGGCTGTTAACCTGGCAAGTTCAACCCGATTGGTGCTGGAGTTGTCGGGTCATTTACTTGGAAACAAGACCATTCGAATC
ATCAATCAAGTGCCTAATGATCTCAAAGCAGTCTCAGCAGACCCACAACGACTTGAACAGGTGCTGTACAACCTGATCGG
AAACGCAATTAAGTACACCTCTGAAGGTAAGATCGTTATTTCTGCAGGAGTCGTAGACGATTTAGTTCGCGTTCAAGTGG
TCGACACCGGACAAGGTATTCCTGCTGAGCACCTTGAGCACATCTTTGAGCCTTTAATTCAGGCAGGACAGGATGAAAGT
CGCTATCGTCAAGGTGCGGGGTTAGGTTTATCAATTAGCCGCCAGTTGATTGAGCTAATGGGCGGCTCCTTATATGTCAG
CAGCCAACCTATGGTAGGGACCACATTCAGCTTCACTCTGCCTCTCGCCAGTGAAGAAGAGATCCTAGCAACACAGACGC
AGGCAGCCTGTGGGCACTTCCAGGTTCCAGAAATTAACCTTGAGAACACAGACGACCTATCGCTACCAGAAAACCCAGAT
GGTCCGCTACTTTATGTAGCAGACGATGAACCAGTCAACCTACGAGTACTTGAAAGCTTTTTACGCTTAGAAGGCTATCG
TGTAAGAACCGTTTCAGATGGTCCAGAAACACTTGCTCTTGTCGAGCAAGAAAAGCCGGAACTGCTGCTGCTCGATATCA
TGATGCCAGGAATGAGTGGCTATCAAGTATGTAATGAATTGCGTCAAACCTTTGATCATGCTGAGCTGCCAATCATTATG
CTAACCGCCTTAAGTCAAACTGAAGACCGAGTTAGAGGCTTTGAAGCCGGAGCAAACGATTATTTGTCGAAGCCTTTTAA
CAAACAAGAGCTTGCAGCCAGAATTAGAGCTCATTTGACCGCAAGTAAAGCAGAGATGCGTCATATTGAGAATAAAGTAC
TTGAGTCGGAACTTCGTCAACGAGCTGAAGTAGAAGCGAGCTTGCTTGAAACTCAGGGGCGTCTGCTAGAGCAACTTGAA
TCCGCTCCTGAGGCGATTATTTGCTTGCGCGAAGATCAACGTGTTCGTTTTGCCAACGAAGCCGCATGTAAGCTGTTTAA
ACGTAGCTTAGAGCAAATTAAACGTTCGTCTGCCGATGAGCTGATTGCTCCAAAATTTCTGACCGTTAAGCAGCCACATT
ATTGCGGGAAAATTGATATTTATATCGAGGACATTCGCCAAAATATTGAAGCGGACATCCTTAAGCTTCCAGAAGGTTCC
GGCCTAGACGTTATGTACATATTTAATGTCGGTGGCGGCGCAAATACAGCGCGCATTCACAACCTGGAAACGGCAGTGGA
GGTACTTTCTCGCTATGCCTTTGACGGCGACAAAGAACAGCTACAGAAGCTTAAAGAGCTTGGAGGCGAGTTCACTCGAC
TGGCAGACAAAGCACTAGGCAATAAAAAAGACAAACAAGAAGTTATGCGTGAAGTACTGGTCGAAGCGATGACACATGCT
TTGGAATACTGGGAGTCTGTCACTGGAGAAAGTAAGTTTACCTTTGCCGAGCAAAGTGGTCTTTGGCGCGTTTACCTTGA
TAGAAGTACGCTACAAACCCGTACTCTAGATAAATACATGCGCATTGAAACCTTACCTAAAACTCCGCGCTGGAGAACGG
TTTTAAGCTCTATCGAGTTCATCCTTGAGCACTGTAAAGAACAAAGTCCGGAGCGTGCTTACATTGAAGCGCAGCGTGAC
AAGCTGCAAAGGTTACTTACCAGCTAG

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	75.554	100	0.756