Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BA893_RS10700 Genome accession   NZ_CP016349
Coordinates   2372890..2374251 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367890..2379251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS10665 (BA893_10665) moaE 2368448..2368903 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  BA893_RS10670 (BA893_10670) moaD 2368905..2369162 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  BA893_RS10675 (BA893_10675) moaC 2369159..2369638 (-) 480 WP_065299954.1 cyclic pyranopterin monophosphate synthase MoaC -
  BA893_RS10680 (BA893_10680) moaB 2369666..2370178 (-) 513 WP_065299955.1 molybdenum cofactor biosynthesis protein B -
  BA893_RS10685 (BA893_10685) moaA 2370279..2371268 (-) 990 WP_065299956.1 GTP 3',8-cyclase MoaA -
  BA893_RS10690 (BA893_10690) - 2371575..2372471 (+) 897 WP_065299957.1 YvcK family protein -
  BA893_RS10695 (BA893_10695) luxU 2372549..2372893 (-) 345 WP_081280089.1 quorum-sensing phosphorelay protein LuxU -
  BA893_RS10700 (BA893_10700) luxO 2372890..2374251 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BA893_RS10705 (BA893_10705) uvrB 2374582..2376612 (-) 2031 WP_065299959.1 excinuclease ABC subunit UvrB -
  BA893_RS10715 (BA893_10715) rsxA 2377717..2378295 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  BA893_RS10720 (BA893_10720) rsxB 2378299..2378895 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=187209 BA893_RS10700 WP_049794667.1 2372890..2374251(-) (luxO) [Vibrio natriegens strain CCUG 16373]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=187209 BA893_RS10700 WP_049794667.1 2372890..2374251(-) (luxO) [Vibrio natriegens strain CCUG 16373]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGATATGA
CGGGTATGGACGTTCTTCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGATTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCAACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCGAGTAAACGAGGCGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAATTAGCGGATGGCGGTACGCTTTTCCTCGATGAACTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTCAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCTATTGAACGCGCAATTGAAGCGTGTGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGTCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment