Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | BA893_RS06870 | Genome accession | NZ_CP016349 |
| Coordinates | 1520141..1521562 (-) | Length | 473 a.a. |
| NCBI ID | WP_065299516.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16373 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1519708..1563450 | 1520141..1521562 | within | 0 |
Gene organization within MGE regions
Location: 1519708..1563450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA893_RS06865 (BA893_06865) | - | 1519708..1520082 (-) | 375 | WP_020333045.1 | CidA/LrgA family protein | - |
| BA893_RS06870 (BA893_06870) | sbcB | 1520141..1521562 (-) | 1422 | WP_065299516.1 | exodeoxyribonuclease I | Machinery gene |
| BA893_RS06875 (BA893_06875) | - | 1521745..1522941 (+) | 1197 | WP_065299517.1 | tyrosine-type recombinase/integrase | - |
| BA893_RS06880 (BA893_06880) | - | 1523102..1524085 (+) | 984 | WP_065299518.1 | hypothetical protein | - |
| BA893_RS06885 (BA893_06885) | - | 1524145..1524993 (+) | 849 | WP_065299519.1 | DUF2971 domain-containing protein | - |
| BA893_RS06890 (BA893_06890) | - | 1525148..1525885 (+) | 738 | WP_065299520.1 | DUF4062 domain-containing protein | - |
| BA893_RS06895 (BA893_06895) | - | 1526025..1526345 (+) | 321 | WP_081280060.1 | hypothetical protein | - |
| BA893_RS06900 (BA893_06900) | - | 1526505..1526984 (+) | 480 | WP_065299522.1 | hypothetical protein | - |
| BA893_RS06905 (BA893_06905) | - | 1527120..1527455 (+) | 336 | WP_065299523.1 | hypothetical protein | - |
| BA893_RS06910 (BA893_06910) | - | 1527573..1527878 (-) | 306 | WP_065299524.1 | helix-turn-helix transcriptional regulator | - |
| BA893_RS06915 (BA893_06915) | - | 1528043..1528315 (-) | 273 | WP_065299525.1 | hypothetical protein | - |
| BA893_RS06920 (BA893_06920) | - | 1528495..1529154 (-) | 660 | WP_335720504.1 | LexA family protein | - |
| BA893_RS25125 | - | 1529270..1529506 (+) | 237 | WP_081280061.1 | helix-turn-helix transcriptional regulator | - |
| BA893_RS06925 (BA893_06925) | - | 1529609..1530157 (+) | 549 | WP_020333062.1 | toxin YdaT family protein | - |
| BA893_RS26370 | - | 1530227..1530358 (+) | 132 | WP_255201246.1 | hypothetical protein | - |
| BA893_RS06930 (BA893_06930) | - | 1530355..1531143 (+) | 789 | WP_231113041.1 | helix-turn-helix domain-containing protein | - |
| BA893_RS06935 (BA893_06935) | - | 1531140..1531871 (+) | 732 | WP_065299528.1 | ATP-binding protein | - |
| BA893_RS06940 (BA893_06940) | - | 1531872..1532453 (+) | 582 | WP_065299529.1 | hypothetical protein | - |
| BA893_RS06945 (BA893_06945) | - | 1532569..1532892 (-) | 324 | WP_065299530.1 | hypothetical protein | - |
| BA893_RS06950 (BA893_06950) | - | 1533109..1533720 (+) | 612 | WP_065299531.1 | hypothetical protein | - |
| BA893_RS06955 (BA893_06955) | - | 1533861..1534316 (+) | 456 | WP_065299532.1 | hypothetical protein | - |
| BA893_RS06960 (BA893_06960) | - | 1534509..1534967 (+) | 459 | WP_065299533.1 | phage baseplate protein | - |
| BA893_RS06965 (BA893_06965) | - | 1535280..1535609 (+) | 330 | WP_155759979.1 | hypothetical protein | - |
| BA893_RS06970 (BA893_06970) | - | 1535610..1535936 (+) | 327 | WP_065299535.1 | hypothetical protein | - |
| BA893_RS06975 (BA893_06975) | - | 1536018..1536230 (+) | 213 | WP_065299536.1 | hypothetical protein | - |
| BA893_RS06980 (BA893_06980) | - | 1536338..1536787 (+) | 450 | WP_065299537.1 | hypothetical protein | - |
| BA893_RS06985 (BA893_06985) | - | 1537017..1537298 (+) | 282 | WP_065299538.1 | hypothetical protein | - |
| BA893_RS06990 (BA893_06990) | - | 1537298..1537729 (+) | 432 | WP_065299539.1 | M15 family metallopeptidase | - |
| BA893_RS06995 (BA893_06995) | - | 1537770..1537955 (+) | 186 | WP_065299540.1 | hypothetical protein | - |
| BA893_RS07000 (BA893_07000) | - | 1538075..1539289 (+) | 1215 | WP_065299541.1 | tyrosine-type recombinase/integrase | - |
| BA893_RS07005 (BA893_07005) | - | 1539728..1540297 (+) | 570 | WP_020333076.1 | terminase small subunit | - |
| BA893_RS07010 (BA893_07010) | - | 1540251..1542245 (+) | 1995 | WP_231113042.1 | terminase gpA endonuclease subunit | - |
| BA893_RS07015 (BA893_07015) | - | 1542239..1542766 (+) | 528 | WP_065299542.1 | hypothetical protein | - |
| BA893_RS07020 (BA893_07020) | - | 1542766..1544319 (+) | 1554 | WP_020333079.1 | phage portal protein | - |
| BA893_RS07025 (BA893_07025) | - | 1544291..1546261 (+) | 1971 | WP_065299543.1 | phage major capsid protein | - |
| BA893_RS07030 (BA893_07030) | - | 1546322..1546513 (+) | 192 | WP_065299544.1 | hypothetical protein | - |
| BA893_RS07035 (BA893_07035) | - | 1546506..1546784 (+) | 279 | WP_065299545.1 | head-tail joining protein | - |
| BA893_RS07040 (BA893_07040) | - | 1546781..1547413 (+) | 633 | WP_065299546.1 | phage tail protein | - |
| BA893_RS07045 (BA893_07045) | gpU | 1547403..1547849 (+) | 447 | WP_065299547.1 | phage tail terminator protein | - |
| BA893_RS07050 (BA893_07050) | - | 1547852..1548340 (+) | 489 | WP_065299548.1 | phage tail tube protein | - |
| BA893_RS07055 (BA893_07055) | - | 1548340..1548816 (+) | 477 | WP_231113043.1 | hypothetical protein | - |
| BA893_RS07060 (BA893_07060) | - | 1548840..1549169 (+) | 330 | WP_065299550.1 | phage tail assembly protein T | - |
| BA893_RS07065 (BA893_07065) | - | 1549150..1551381 (+) | 2232 | WP_065299551.1 | hypothetical protein | - |
| BA893_RS07070 (BA893_07070) | - | 1551387..1551854 (+) | 468 | WP_231113044.1 | hypothetical protein | - |
| BA893_RS07075 (BA893_07075) | - | 1551851..1555075 (+) | 3225 | WP_065299553.1 | hypothetical protein | - |
| BA893_RS07080 (BA893_07080) | - | 1555078..1555614 (+) | 537 | WP_065299554.1 | DUF1833 family protein | - |
| BA893_RS07085 (BA893_07085) | - | 1555614..1556042 (+) | 429 | WP_065299555.1 | phage tail protein | - |
| BA893_RS07090 (BA893_07090) | - | 1555999..1558821 (+) | 2823 | WP_065299556.1 | host specificity factor TipJ family phage tail protein | - |
| BA893_RS07095 (BA893_07095) | - | 1558889..1559881 (+) | 993 | WP_065299557.1 | hypothetical protein | - |
| BA893_RS25780 | - | 1560286..1560456 (+) | 171 | WP_418379149.1 | hypothetical protein | - |
| BA893_RS07100 (BA893_07100) | - | 1560592..1561323 (+) | 732 | WP_081280062.1 | TIR domain-containing protein | - |
| BA893_RS07105 (BA893_07105) | - | 1561467..1562198 (+) | 732 | WP_155759980.1 | hypothetical protein | - |
| BA893_RS07110 (BA893_07110) | - | 1562293..1563450 (+) | 1158 | WP_065299559.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54456.61 Da Isoelectric Point: 4.7770
>NTDB_id=187205 BA893_RS06870 WP_065299516.1 1520141..1521562(-) (sbcB) [Vibrio natriegens strain CCUG 16373]
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATFEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELRERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATFEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELRERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=187205 BA893_RS06870 WP_065299516.1 1520141..1521562(-) (sbcB) [Vibrio natriegens strain CCUG 16373]
ATGAATAACTCAGAACAGCCGACATTCTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAACCT
GAGTTCATTGCTAAAATTCATGCTGAGTTATCCAAACCCAATACCACCAGCTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAACATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGTTCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTAATGCACGTTTCTGGCATGTTAGGACGTGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCAATCTTAGAACTGTCTGCGGAAGAGCTGCGCGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCACTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCAGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAACAACCTGGCGGCTCTCGATATTGAGTTCGATGACAAACGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA
ATGAATAACTCAGAACAGCCGACATTCTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAACCT
GAGTTCATTGCTAAAATTCATGCTGAGTTATCCAAACCCAATACCACCAGCTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAACATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGTTCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTAATGCACGTTTCTGGCATGTTAGGACGTGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCAATCTTAGAACTGTCTGCGGAAGAGCTGCGCGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCACTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCAGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAACAACCTGGCGGCTCTCGATATTGAGTTCGATGACAAACGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |