Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BA891_RS17495 Genome accession   NZ_CP016348
Coordinates   527297..528394 (+) Length   365 a.a.
NCBI ID   WP_014233771.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 522297..533394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS17465 (BA891_17465) - 522431..523414 (+) 984 WP_065303342.1 Gfo/Idh/MocA family protein -
  BA891_RS17470 (BA891_17470) - 523506..524843 (-) 1338 WP_065303343.1 MATE family efflux transporter -
  BA891_RS17475 (BA891_17475) - 524976..525290 (-) 315 WP_020334143.1 DUF496 family protein -
  BA891_RS17480 (BA891_17480) - 525682..525885 (+) 204 WP_014233768.1 hypothetical protein -
  BA891_RS17485 (BA891_17485) - 526043..526687 (+) 645 WP_014233769.1 YceH family protein -
  BA891_RS17490 (BA891_17490) - 526687..527001 (+) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  BA891_RS17495 (BA891_17495) luxP 527297..528394 (+) 1098 WP_014233771.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BA891_RS17500 (BA891_17500) luxQ 528394..530967 (+) 2574 WP_065303344.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  BA891_RS17505 (BA891_17505) - 531142..531597 (+) 456 WP_014233773.1 MarR family transcriptional regulator -
  BA891_RS17510 (BA891_17510) - 531631..532689 (+) 1059 WP_065303345.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41615.93 Da        Isoelectric Point: 5.3236

>NTDB_id=187191 BA891_RS17495 WP_014233771.1 527297..528394(+) (luxP) [Vibrio natriegens strain CCUG 16371]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQKQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSHRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILDGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=187191 BA891_RS17495 WP_014233771.1 527297..528394(+) (luxP) [Vibrio natriegens strain CCUG 16371]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAAGCAACTAACCAACGCACTGGCTGAAGCTGTCAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCTGTCGTTTACCCAGGGCAGCAAATCTCAGAT
TACTGGATCAGAAACATAGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
CCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACTACCAGACATCGCAAATTTATTGAGCATGTCTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACACCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCATCGCTTCCCCCAAAACACTCACTACAGTGTGCTTTACTTTTCAGAAGGCTACATTAGTGATG
TAAGAGGGAATACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGATTTTATTTATGCTTGCTCAACAGA
CGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAGATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACTGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment