Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BA891_RS12235 Genome accession   NZ_CP016347
Coordinates   2719341..2719859 (-) Length   172 a.a.
NCBI ID   WP_065302871.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714341..2724859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS12210 (BA891_12210) rimM 2714423..2714971 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  BA891_RS12215 (BA891_12215) rpsP 2715002..2715250 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  BA891_RS12220 (BA891_12220) ffh 2715459..2716841 (-) 1383 WP_065302870.1 signal recognition particle protein -
  BA891_RS12225 (BA891_12225) - 2717066..2717860 (+) 795 WP_014232960.1 cytochrome C assembly family protein -
  BA891_RS12230 (BA891_12230) - 2717979..2719256 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  BA891_RS12235 (BA891_12235) luxS 2719341..2719859 (-) 519 WP_065302871.1 S-ribosylhomocysteine lyase Regulator
  BA891_RS12240 (BA891_12240) - 2719929..2720534 (-) 606 WP_014232963.1 hypothetical protein -
  BA891_RS12245 (BA891_12245) gshA 2720559..2722127 (-) 1569 WP_065300190.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.72 Da        Isoelectric Point: 4.6077

>NTDB_id=187170 BA891_RS12235 WP_065302871.1 2719341..2719859(-) (luxS) [Vibrio natriegens strain CCUG 16371]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=187170 BA891_RS12235 WP_065302871.1 2719341..2719859(-) (luxS) [Vibrio natriegens strain CCUG 16371]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGTGTTGAGATCATTGATATTTCGCCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGCACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTAAAAGTCGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGCAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAATTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment