Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BA891_RS09940 Genome accession   NZ_CP016347
Coordinates   2211389..2212750 (-) Length   453 a.a.
NCBI ID   WP_065303096.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206389..2217750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS09905 (BA891_09905) moaE 2206947..2207402 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  BA891_RS09910 (BA891_09910) moaD 2207404..2207661 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  BA891_RS09915 (BA891_09915) moaC 2207658..2208137 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  BA891_RS09920 (BA891_09920) moaB 2208165..2208677 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  BA891_RS09925 (BA891_09925) moaA 2208778..2209767 (-) 990 WP_065303095.1 GTP 3',8-cyclase MoaA -
  BA891_RS09930 (BA891_09930) - 2210074..2210970 (+) 897 WP_065302654.1 YvcK family protein -
  BA891_RS09935 (BA891_09935) luxU 2211048..2211392 (-) 345 WP_081281019.1 quorum-sensing phosphorelay protein LuxU -
  BA891_RS09940 (BA891_09940) luxO 2211389..2212750 (-) 1362 WP_065303096.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BA891_RS09945 (BA891_09945) uvrB 2213081..2215111 (-) 2031 WP_065299959.1 excinuclease ABC subunit UvrB -
  BA891_RS09955 (BA891_09955) rsxA 2216216..2216794 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  BA891_RS09960 (BA891_09960) rsxB 2216798..2217394 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50396.42 Da        Isoelectric Point: 6.0277

>NTDB_id=187163 BA891_RS09940 WP_065303096.1 2211389..2212750(-) (luxO) [Vibrio natriegens strain CCUG 16371]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDILHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKTCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=187163 BA891_RS09940 WP_065303096.1 2211389..2212750(-) (luxO) [Vibrio natriegens strain CCUG 16371]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGATATGA
CGGGTATGGACATTCTGCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAAACTTGTGAAGCCGACCGATTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCCGAAGCTATCCATGCCGCAAGCAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCTAAAGACCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAACTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGACTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

98.896

0.854

Multiple sequence alignment