Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BA891_RS06275 Genome accession   NZ_CP016347
Coordinates   1382151..1383572 (-) Length   473 a.a.
NCBI ID   WP_065302254.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377151..1388572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS06250 (BA891_06250) - 1377757..1378407 (+) 651 WP_065302252.1 thiopurine S-methyltransferase -
  BA891_RS06255 (BA891_06255) purT 1378499..1379674 (-) 1176 WP_014231623.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BA891_RS06260 (BA891_06260) cdd 1379822..1380709 (-) 888 WP_014231624.1 cytidine deaminase -
  BA891_RS06265 (BA891_06265) - 1381039..1381716 (-) 678 WP_014231625.1 LrgB family protein -
  BA891_RS06270 (BA891_06270) - 1381718..1382092 (-) 375 WP_065302253.1 CidA/LrgA family protein -
  BA891_RS06275 (BA891_06275) sbcB 1382151..1383572 (-) 1422 WP_065302254.1 exodeoxyribonuclease I Machinery gene
  BA891_RS23285 - 1383769..1383981 (+) 213 WP_237333476.1 hypothetical protein -
  BA891_RS06280 (BA891_06280) - 1384126..1384608 (+) 483 WP_065302255.1 hypothetical protein -
  BA891_RS06285 (BA891_06285) - 1384632..1385147 (+) 516 WP_065302256.1 hypothetical protein -
  BA891_RS06290 (BA891_06290) - 1385201..1385740 (+) 540 WP_065302257.1 hypothetical protein -
  BA891_RS06295 (BA891_06295) - 1385807..1387540 (-) 1734 WP_065302258.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54453.61 Da        Isoelectric Point: 4.8188

>NTDB_id=187159 BA891_RS06275 WP_065302254.1 1382151..1383572(-) (sbcB) [Vibrio natriegens strain CCUG 16371]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=187159 BA891_RS06275 WP_065302254.1 1382151..1383572(-) (sbcB) [Vibrio natriegens strain CCUG 16371]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCCAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAGTGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAATTGTTTGATTACTTCTTCTCCATGCGTCAAAAACGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGTGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGACCTCGGTGATTTACTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGTGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTATTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment