Detailed information NTG0187149

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BA891_RS01265
• Genome accession: NZ_CP016347
• Coordinates: 277251..278258 (-)
• Length: 335 a.a.
• NCBI ID: WP_065301894.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain CCUG 16371
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 272251..283258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA891_RS01235 (BA891_01235)	zapB	272375..272617 (+)	243	WP_014230654.1	cell division protein ZapB	-
BA891_RS01240 (BA891_01240)	rraA	272691..273233 (-)	543	WP_014230655.1	ribonuclease E activity regulator RraA	-
BA891_RS01245 (BA891_01245)	-	273310..274227 (-)	918	WP_014230656.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BA891_RS01250 (BA891_01250)	hslU	274483..275814 (-)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
BA891_RS01255 (BA891_01255)	hslV	275838..276389 (-)	552	WP_014230658.1	ATP-dependent protease subunit HslV	-
BA891_RS01260 (BA891_01260)	-	276544..277089 (-)	546	WP_014230659.1	SPOR domain-containing protein	-
BA891_RS01265 (BA891_01265)	cytR	277251..278258 (-)	1008	WP_065301894.1	DNA-binding transcriptional regulator CytR	Regulator
BA891_RS01270 (BA891_01270)	priA	278594..280798 (-)	2205	WP_065301895.1	primosomal protein N'	-
BA891_RS01275 (BA891_01275)	rpmE	281096..281317 (+)	222	WP_014230662.1	50S ribosomal protein L31	-
BA891_RS01280 (BA891_01280)	rpsJ	281776..282087 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
BA891_RS01285 (BA891_01285)	rplC	282102..282731 (+)	630	WP_014230663.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36870.35 Da
• Isoelectric Point: 6.2447

>NTDB_id=187149 BA891_RS01265 WP_065301894.1 277251..278258(-) (cytR) [Vibrio natriegens strain CCUG 16371]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRV

Nucleotide

• Length: 1008 bp

>NTDB_id=187149 BA891_RS01265 WP_065301894.1 277251..278258(-) (cytR) [Vibrio natriegens strain CCUG 16371]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAATCGAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCGATGGAGCACGGCTACCTGGTTTTACTGGGAGACAGCGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACTTGGTATTTACAAAGCAAGCAGATGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTGAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTGGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGACACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAGCAAGGCTACCAGCAAGCGCTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGAGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTCGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACTATCTCTCAGCCTCGCTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCGGCGCCTCCTCAGCGAGTGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.605	99.701	0.973
cytR	Vibrio cholerae C6706	89.222	99.701	0.89