Detailed information NTG0187128

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BA890_RS12155
• Genome accession: NZ_CP016345
• Coordinates: 2677283..2678269 (-)
• Length: 328 a.a.
• NCBI ID: WP_061778639.1
• Uniprot ID: A0AAN0Y3X5
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2672283..2683269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA890_RS12140 (BA890_12140)	recA	2672834..2673880 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
BA890_RS12145 (BA890_12145)	pncC	2674071..2674562 (-)	492	WP_020333963.1	nicotinamide-nucleotide amidase	-
BA890_RS12150 (BA890_12150)	mutS	2674647..2677208 (+)	2562	WP_014232976.1	DNA mismatch repair protein MutS	-
BA890_RS12155 (BA890_12155)	rpoS	2677283..2678269 (-)	987	WP_061778639.1	RNA polymerase sigma factor RpoS	Regulator
BA890_RS12160 (BA890_12160)	-	2678350..2679273 (-)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
BA890_RS12165 (BA890_12165)	-	2679287..2679913 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BA890_RS12170 (BA890_12170)	surE	2679913..2680659 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
BA890_RS12175 (BA890_12175)	truD	2680689..2681732 (-)	1044	WP_020333968.1	tRNA pseudouridine(13) synthase TruD	-
BA890_RS12180 (BA890_12180)	ispF	2681775..2682254 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BA890_RS12185 (BA890_12185)	ispD	2682268..2682975 (-)	708	WP_020333970.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BA890_RS12190 (BA890_12190)	ftsB	2682977..2683258 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37316.14 Da
• Isoelectric Point: 4.7268

>NTDB_id=187128 BA890_RS12155 WP_061778639.1 2677283..2678269(-) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLNRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=187128 BA890_RS12155 WP_061778639.1 2677283..2678269(-) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGTTTAGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGAACCGTGCAGTTGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACCATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATTATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAA
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854