Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BA890_RS12025 Genome accession   NZ_CP016345
Coordinates   2655148..2655666 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650148..2660666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA890_RS12000 (BA890_12000) rimM 2650230..2650778 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  BA890_RS12005 (BA890_12005) rpsP 2650809..2651057 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  BA890_RS12010 (BA890_12010) ffh 2651266..2652648 (-) 1383 WP_014232959.1 signal recognition particle protein -
  BA890_RS12015 (BA890_12015) - 2652873..2653667 (+) 795 WP_014232960.1 cytochrome C assembly family protein -
  BA890_RS12020 (BA890_12020) - 2653786..2655063 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  BA890_RS12025 (BA890_12025) luxS 2655148..2655666 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  BA890_RS12030 (BA890_12030) - 2655736..2656341 (-) 606 WP_014232963.1 hypothetical protein -
  BA890_RS12035 (BA890_12035) gshA 2656366..2657934 (-) 1569 WP_020333954.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=187125 BA890_RS12025 WP_014232962.1 2655148..2655666(-) (luxS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=187125 BA890_RS12025 WP_014232962.1 2655148..2655666(-) (luxS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCTGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGATTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGACGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment