Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BA890_RS09995 Genome accession   NZ_CP016345
Coordinates   2198206..2199567 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2193206..2204567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA890_RS09960 (BA890_09960) moaE 2193764..2194219 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  BA890_RS09965 (BA890_09965) moaD 2194221..2194478 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  BA890_RS09970 (BA890_09970) moaC 2194475..2194954 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  BA890_RS09975 (BA890_09975) moaB 2194982..2195494 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  BA890_RS09980 (BA890_09980) moaA 2195595..2196584 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  BA890_RS09985 (BA890_09985) - 2196891..2197787 (+) 897 WP_020335670.1 YvcK family protein -
  BA890_RS09990 (BA890_09990) luxU 2197865..2198209 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  BA890_RS09995 (BA890_09995) luxO 2198206..2199567 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BA890_RS10000 (BA890_10000) uvrB 2199898..2201928 (-) 2031 WP_014232536.1 excinuclease ABC subunit UvrB -
  BA890_RS10010 (BA890_10010) rsxA 2202914..2203492 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  BA890_RS10015 (BA890_10015) rsxB 2203496..2204092 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=187118 BA890_RS09995 WP_049794667.1 2198206..2199567(-) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=187118 BA890_RS09995 WP_049794667.1 2198206..2199567(-) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGTCTGAAACATCGTATTCCCGACCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCAATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGCTTGCGTGTCAC
GGTGAACAACGCGATACGTAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGTAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAACAGGTTTACCGCACCATTGACTCAGCAGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAACTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGACTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment