Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AWB10_RS09785 Genome accession   NZ_CP020509
Coordinates   1932606..1933082 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927606..1938082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB10_RS09735 (AWB10_09730) sbmC 1928098..1928571 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  AWB10_RS09740 (AWB10_09735) yeeA 1928769..1929827 (+) 1059 WP_072646463.1 FUSC family protein -
  AWB10_RS09745 (AWB10_09740) tmaR 1929999..1930328 (+) 330 WP_000450409.1 DUF496 family protein -
  AWB10_RS09750 (AWB10_09745) - 1930429..1930611 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AWB10_RS09755 (AWB10_09750) - 1930683..1930811 (+) 129 Protein_1793 transposase domain-containing protein -
  AWB10_RS28915 - 1931100..1931180 (-) 81 Protein_1794 hypothetical protein -
  AWB10_RS09765 (AWB10_09755) yeeW 1931226..1931420 (-) 195 WP_000988600.1 DUF5983 family protein -
  AWB10_RS09770 (AWB10_09760) cbtA 1931417..1931791 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AWB10_RS09775 (AWB10_09765) cbeA 1931880..1932248 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AWB10_RS09780 (AWB10_09770) yeeT 1932322..1932543 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  AWB10_RS09785 (AWB10_09775) radC 1932606..1933082 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  AWB10_RS09790 (AWB10_09780) - 1933098..1933577 (-) 480 WP_000860076.1 antirestriction protein -
  AWB10_RS09795 (AWB10_09785) - 1933659..1934480 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  AWB10_RS09805 (AWB10_09795) - 1934701..1935111 (-) 411 WP_000846713.1 hypothetical protein -
  AWB10_RS09810 (AWB10_09800) - 1935127..1935810 (-) 684 WP_001514307.1 hypothetical protein -
  AWB10_RS09815 (AWB10_09805) - 1935946..1937016 (-) 1071 WP_000102624.1 patatin-like phospholipase family protein -
  AWB10_RS09820 (AWB10_09810) - 1937013..1937918 (-) 906 WP_072646464.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=187095 AWB10_RS09785 WP_001186773.1 1932606..1933082(-) (radC) [Escherichia coli strain 165]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=187095 AWB10_RS09785 WP_001186773.1 1932606..1933082(-) (radC) [Escherichia coli strain 165]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment