Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AWB10_RS09725 Genome accession   NZ_CP020509
Coordinates   1925177..1926604 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 165     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920177..1931604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB10_RS09695 (AWB10_09695) yeeZ 1920232..1921056 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  AWB10_RS09700 (AWB10_09700) yeeY 1921102..1922031 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AWB10_RS09705 yoeI 1922246..1922308 (+) 63 WP_010723108.1 membrane protein YoeI -
  AWB10_RS09710 (AWB10_09705) plaP 1922298..1923656 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AWB10_RS09715 (AWB10_09710) tsuA 1923835..1924893 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  AWB10_RS09720 (AWB10_09715) tsuB 1924907..1925134 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AWB10_RS09725 (AWB10_09720) sbcB 1925177..1926604 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  AWB10_RS09730 (AWB10_09725) dacD 1926813..1927979 (+) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AWB10_RS09735 (AWB10_09730) sbmC 1928098..1928571 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  AWB10_RS09740 (AWB10_09735) yeeA 1928769..1929827 (+) 1059 WP_072646463.1 FUSC family protein -
  AWB10_RS09745 (AWB10_09740) tmaR 1929999..1930328 (+) 330 WP_000450409.1 DUF496 family protein -
  AWB10_RS09750 (AWB10_09745) - 1930429..1930611 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AWB10_RS09755 (AWB10_09750) - 1930683..1930811 (+) 129 Protein_1793 transposase domain-containing protein -
  AWB10_RS28915 - 1931100..1931180 (-) 81 Protein_1794 hypothetical protein -
  AWB10_RS09765 (AWB10_09755) yeeW 1931226..1931420 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=187094 AWB10_RS09725 WP_000980608.1 1925177..1926604(-) (sbcB) [Escherichia coli strain 165]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=187094 AWB10_RS09725 WP_000980608.1 1925177..1926604(-) (sbcB) [Escherichia coli strain 165]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTTCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581