Detailed information
Bioinformatically predicted
Overview
| Name | rpoN/rpoN1 | Type | Machinery gene |
| Locus tag | BBB39_RS20410 | Genome accession | NZ_CP016340 |
| Coordinates | 4356013..4357440 (-) | Length | 475 a.a. |
| NCBI ID | WP_052125644.1 | Uniprot ID | A0A157MNK8 |
| Organism | Bordetella trematum strain F581 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4351013..4362440
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB39_RS20385 (BBB39_20115) | - | 4351769..4352398 (+) | 630 | WP_025514979.1 | LysE family transporter | - |
| BBB39_RS20390 (BBB39_20120) | - | 4352422..4354029 (+) | 1608 | WP_063491674.1 | peptide chain release factor 3 | - |
| BBB39_RS20395 (BBB39_20125) | - | 4354064..4354723 (+) | 660 | WP_033534324.1 | hypothetical protein | - |
| BBB39_RS20400 (BBB39_20130) | bfr | 4354789..4355265 (-) | 477 | WP_025514976.1 | bacterioferritin | - |
| BBB39_RS20405 (BBB39_20135) | - | 4355625..4355903 (-) | 279 | WP_033534323.1 | (2Fe-2S)-binding protein | - |
| BBB39_RS20410 (BBB39_20140) | rpoN/rpoN1 | 4356013..4357440 (-) | 1428 | WP_052125644.1 | RNA polymerase factor sigma-54 | Machinery gene |
| BBB39_RS20415 (BBB39_20145) | - | 4357439..4358086 (+) | 648 | WP_082832945.1 | hypothetical protein | - |
| BBB39_RS20420 (BBB39_20150) | leuA | 4358464..4360167 (+) | 1704 | WP_025514972.1 | 2-isopropylmalate synthase | - |
| BBB39_RS20425 (BBB39_20155) | - | 4360219..4361508 (-) | 1290 | WP_025514971.1 | amidase | - |
Sequence
Protein
Download Length: 475 a.a. Molecular weight: 51921.05 Da Isoelectric Point: 4.9939
>NTDB_id=187047 BBB39_RS20410 WP_052125644.1 4356013..4357440(-) (rpoN/rpoN1) [Bordetella trematum strain F581]
MQNIVPMTRPALELRASQHLALTPQLQQSIRLLQLSALELEAEIAQALADNPMLERAEDDVAAPQDAEAASGESAAAELE
DAWEASQRRLDEAGGGDDDLPQAARETTLREHLLGQLALTRAAPRDAALTALLIDELDDNGYLASPLEEIRQWLPVELDI
DDDELRAALRLLQSFEPPGVGARDLAECLSLQLRQPDTACLPEAADVQVLECARRLCAGHLPLLAAGNPQRLREALAVDD
ATLRAARALIVRLDPRPGRAWTAPAADFAVPDVLVHRRAAGWQAVLNPAVMPRLHINQHYANLLANRRESAYASLQGQLQ
QARWMIRNVEQRFDTILRVSQAIVAHQAAFFSEGPAAMRPLILKDIAGELGLHESTISRATAQKFMLTPYGTMELKRFFG
SGVATESGETTSATAVQAHIRQMVAEEEPGRPLSDSQLVQQLADKGIVIARRTVAKYRELLRIAPATVRRAQAGR
MQNIVPMTRPALELRASQHLALTPQLQQSIRLLQLSALELEAEIAQALADNPMLERAEDDVAAPQDAEAASGESAAAELE
DAWEASQRRLDEAGGGDDDLPQAARETTLREHLLGQLALTRAAPRDAALTALLIDELDDNGYLASPLEEIRQWLPVELDI
DDDELRAALRLLQSFEPPGVGARDLAECLSLQLRQPDTACLPEAADVQVLECARRLCAGHLPLLAAGNPQRLREALAVDD
ATLRAARALIVRLDPRPGRAWTAPAADFAVPDVLVHRRAAGWQAVLNPAVMPRLHINQHYANLLANRRESAYASLQGQLQ
QARWMIRNVEQRFDTILRVSQAIVAHQAAFFSEGPAAMRPLILKDIAGELGLHESTISRATAQKFMLTPYGTMELKRFFG
SGVATESGETTSATAVQAHIRQMVAEEEPGRPLSDSQLVQQLADKGIVIARRTVAKYRELLRIAPATVRRAQAGR
Nucleotide
Download Length: 1428 bp
>NTDB_id=187047 BBB39_RS20410 WP_052125644.1 4356013..4357440(-) (rpoN/rpoN1) [Bordetella trematum strain F581]
ATGCAAAATATTGTACCTATGACTCGTCCTGCGTTAGAACTTCGCGCTTCACAGCATTTGGCATTGACGCCACAGCTGCA
ACAGTCCATTCGATTGTTGCAGCTTTCGGCGCTGGAGCTGGAGGCCGAGATTGCGCAGGCCCTGGCCGACAATCCCATGC
TGGAGCGCGCCGAGGACGATGTGGCCGCGCCGCAGGATGCCGAGGCGGCTTCGGGCGAGTCCGCAGCCGCCGAGCTGGAA
GATGCCTGGGAGGCGTCGCAGCGGCGTCTGGACGAGGCGGGCGGCGGCGATGACGATCTGCCCCAGGCGGCGCGCGAGAC
GACGTTGCGCGAGCATTTGCTGGGTCAGCTGGCGCTTACTCGCGCTGCGCCGCGCGATGCCGCCCTGACCGCCCTGCTGA
TCGACGAACTGGACGACAACGGTTATCTGGCCTCGCCGCTGGAGGAAATCCGGCAGTGGTTGCCGGTCGAACTGGACATC
GACGACGACGAGCTGCGTGCCGCATTGCGACTGTTGCAGTCTTTCGAGCCGCCGGGCGTCGGCGCGCGCGATCTGGCCGA
GTGCCTGTCGCTGCAATTGCGCCAGCCGGATACCGCATGCCTGCCCGAGGCGGCCGACGTCCAGGTGCTGGAGTGCGCCA
GGCGACTGTGCGCCGGCCATTTGCCGCTGCTGGCTGCCGGCAACCCGCAGCGGCTGCGCGAGGCTCTGGCGGTGGATGAC
GCTACCCTGCGGGCTGCGCGCGCCCTGATCGTGCGCCTGGACCCGCGTCCGGGGCGGGCCTGGACGGCCCCGGCGGCCGA
TTTTGCCGTGCCCGATGTCCTGGTGCATCGCCGCGCCGCAGGATGGCAGGCGGTGCTCAATCCGGCGGTCATGCCGCGCC
TGCATATCAATCAGCATTACGCCAACCTGCTGGCGAACCGGCGCGAGAGCGCCTATGCCAGCCTGCAAGGCCAGTTGCAG
CAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGGTTCGATACGATCCTGCGGGTATCGCAGGCCATCGTGGCGCATCA
GGCGGCCTTCTTCAGCGAAGGGCCTGCCGCGATGCGTCCTCTCATCCTCAAGGACATTGCCGGCGAACTGGGCTTGCACG
AGTCGACCATTTCGCGCGCCACCGCCCAGAAATTCATGCTCACGCCGTACGGGACCATGGAGCTCAAGCGTTTTTTCGGC
AGCGGCGTGGCGACCGAGAGCGGCGAGACGACGTCGGCCACGGCCGTGCAGGCGCATATCCGGCAGATGGTGGCCGAGGA
GGAGCCGGGCCGGCCGCTCTCGGATAGCCAGCTTGTCCAGCAGTTGGCCGACAAAGGCATCGTGATCGCCCGACGCACCG
TGGCGAAGTACCGTGAACTGCTGCGCATCGCGCCGGCGACGGTACGGCGCGCGCAGGCGGGGCGTTGA
ATGCAAAATATTGTACCTATGACTCGTCCTGCGTTAGAACTTCGCGCTTCACAGCATTTGGCATTGACGCCACAGCTGCA
ACAGTCCATTCGATTGTTGCAGCTTTCGGCGCTGGAGCTGGAGGCCGAGATTGCGCAGGCCCTGGCCGACAATCCCATGC
TGGAGCGCGCCGAGGACGATGTGGCCGCGCCGCAGGATGCCGAGGCGGCTTCGGGCGAGTCCGCAGCCGCCGAGCTGGAA
GATGCCTGGGAGGCGTCGCAGCGGCGTCTGGACGAGGCGGGCGGCGGCGATGACGATCTGCCCCAGGCGGCGCGCGAGAC
GACGTTGCGCGAGCATTTGCTGGGTCAGCTGGCGCTTACTCGCGCTGCGCCGCGCGATGCCGCCCTGACCGCCCTGCTGA
TCGACGAACTGGACGACAACGGTTATCTGGCCTCGCCGCTGGAGGAAATCCGGCAGTGGTTGCCGGTCGAACTGGACATC
GACGACGACGAGCTGCGTGCCGCATTGCGACTGTTGCAGTCTTTCGAGCCGCCGGGCGTCGGCGCGCGCGATCTGGCCGA
GTGCCTGTCGCTGCAATTGCGCCAGCCGGATACCGCATGCCTGCCCGAGGCGGCCGACGTCCAGGTGCTGGAGTGCGCCA
GGCGACTGTGCGCCGGCCATTTGCCGCTGCTGGCTGCCGGCAACCCGCAGCGGCTGCGCGAGGCTCTGGCGGTGGATGAC
GCTACCCTGCGGGCTGCGCGCGCCCTGATCGTGCGCCTGGACCCGCGTCCGGGGCGGGCCTGGACGGCCCCGGCGGCCGA
TTTTGCCGTGCCCGATGTCCTGGTGCATCGCCGCGCCGCAGGATGGCAGGCGGTGCTCAATCCGGCGGTCATGCCGCGCC
TGCATATCAATCAGCATTACGCCAACCTGCTGGCGAACCGGCGCGAGAGCGCCTATGCCAGCCTGCAAGGCCAGTTGCAG
CAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGGTTCGATACGATCCTGCGGGTATCGCAGGCCATCGTGGCGCATCA
GGCGGCCTTCTTCAGCGAAGGGCCTGCCGCGATGCGTCCTCTCATCCTCAAGGACATTGCCGGCGAACTGGGCTTGCACG
AGTCGACCATTTCGCGCGCCACCGCCCAGAAATTCATGCTCACGCCGTACGGGACCATGGAGCTCAAGCGTTTTTTCGGC
AGCGGCGTGGCGACCGAGAGCGGCGAGACGACGTCGGCCACGGCCGTGCAGGCGCATATCCGGCAGATGGTGGCCGAGGA
GGAGCCGGGCCGGCCGCTCTCGGATAGCCAGCTTGTCCAGCAGTTGGCCGACAAAGGCATCGTGATCGCCCGACGCACCG
TGGCGAAGTACCGTGAACTGCTGCGCATCGCGCCGGCGACGGTACGGCGCGCGCAGGCGGGGCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoN/rpoN1 | Ralstonia pseudosolanacearum GMI1000 |
49.407 |
100 |
0.526 |