Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPA47_RS04005 Genome accession   NZ_CP020495
Coordinates   824711..825187 (-) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli strain 103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819711..830187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPA47_RS03965 (CPA47_04240) - 819770..820753 (-) 984 WP_001298261.1 KpsF/GutQ family sugar-phosphate isomerase -
  CPA47_RS03970 (CPA47_04245) - 821564..821734 (-) 171 Protein_770 IS110 family transposase -
  CPA47_RS03975 (CPA47_04250) - 822077..822919 (-) 843 WP_001290171.1 DUF4942 domain-containing protein -
  CPA47_RS03980 (CPA47_04255) - 823004..823201 (-) 198 WP_086795284.1 DUF957 domain-containing protein -
  CPA47_RS03985 - 823277..823426 (-) 150 Protein_773 DUF5983 family protein -
  CPA47_RS03990 (CPA47_04260) - 823423..823800 (-) 378 WP_021543420.1 TA system toxin CbtA family protein -
  CPA47_RS03995 (CPA47_04265) - 823890..824258 (-) 369 WP_001280951.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CPA47_RS04000 (CPA47_04270) - 824421..824642 (-) 222 WP_001405861.1 DUF987 domain-containing protein -
  CPA47_RS04005 (CPA47_04275) radC 824711..825187 (-) 477 WP_001186724.1 RadC family protein Machinery gene
  CPA47_RS04010 (CPA47_04280) - 825203..825688 (-) 486 WP_000213717.1 antirestriction protein -
  CPA47_RS04015 (CPA47_04285) - 825765..826583 (-) 819 WP_001175170.1 DUF932 domain-containing protein -
  CPA47_RS04020 (CPA47_04290) - 826673..826906 (-) 234 WP_001278288.1 DUF905 family protein -
  CPA47_RS04025 (CPA47_04295) - 826912..827589 (-) 678 WP_001097362.1 hypothetical protein -
  CPA47_RS04030 (CPA47_04300) - 827708..828592 (-) 885 WP_000010399.1 GTPase -
  CPA47_RS04035 (CPA47_04305) - 828699..829685 (+) 987 WP_029396404.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=186994 CPA47_RS04005 WP_001186724.1 824711..825187(-) (radC) [Escherichia coli strain 103]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=186994 CPA47_RS04005 WP_001186724.1 824711..825187(-) (radC) [Escherichia coli strain 103]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392