Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A9176_RS00915 Genome accession   NZ_CP016329
Coordinates   192925..194715 (-) Length   596 a.a.
NCBI ID   WP_077281889.1    Uniprot ID   -
Organism   Leuconostoc garlicum strain KFRI01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 187925..199715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9176_RS00890 (A9176_00875) - 188836..189219 (-) 384 WP_029509908.1 VOC family protein -
  A9176_RS00895 (A9176_00880) - 189275..190291 (-) 1017 WP_029509909.1 zinc-dependent alcohol dehydrogenase family protein -
  A9176_RS00900 (A9176_00885) - 190473..191447 (+) 975 WP_077281887.1 LacI family DNA-binding transcriptional regulator -
  A9176_RS00905 (A9176_00890) - 191483..192406 (-) 924 WP_077281888.1 phosphoglycerate dehydrogenase -
  A9176_RS00910 (A9176_00895) - 192454..192852 (-) 399 WP_010006087.1 cytidine deaminase -
  A9176_RS00915 (A9176_00900) pepF 192925..194715 (-) 1791 WP_077281889.1 oligoendopeptidase F Regulator
  A9176_RS00920 (A9176_00905) - 194796..195824 (-) 1029 WP_077281890.1 competence protein CoiA family protein -
  A9176_RS00925 (A9176_00910) - 195873..197312 (-) 1440 WP_077283213.1 ABC transporter substrate-binding protein/permease -
  A9176_RS00930 (A9176_00915) - 197416..198168 (-) 753 WP_010004224.1 amino acid ABC transporter ATP-binding protein -
  A9176_RS00935 (A9176_00920) - 198165..199613 (-) 1449 WP_029509915.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67375.90 Da        Isoelectric Point: 4.3376

>NTDB_id=186964 A9176_RS00915 WP_077281889.1 192925..194715(-) (pepF) [Leuconostoc garlicum strain KFRI01]
MAQLQRDEVPEELTWDLTSIFATDDDWETAYDAVYQGAQALKQFVGHVGDSAQTLQAALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLANYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=186964 A9176_RS00915 WP_077281889.1 192925..194715(-) (pepF) [Leuconostoc garlicum strain KFRI01]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACCGATGACGATTG
GGAAACAGCCTATGATGCCGTTTATCAAGGCGCACAGGCGCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAGCAGCACTGGAAGCTGATCTTGATTTGGAACGTCAATTAGAAAAAGTCTATGTCTATGCGCACCAAATTTAT
GATCAAGACACAACCAATCAAAAATATGCCGCTTTTAATAGTCGTGCGCAAGCGCTTTGGTCTGAAGTCAGTGAAGCAAC
AGCTTATTTCCAACCAGAAGTGTTGAATATTCCAGAAGAAACGTTGGCGAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACTTTGCCAGCAGAACAGGAAGCACTGTTGGCCGGAGCA
GGGGATATTTTTAACGCGTCAGAAAACACTTTTGGTGCGTTAGATAACTCCGACATGACTTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTGACAAATGGCCTTTACAGCCTGTTGCTGGAATCTAAGTCACGTGAATTGCGCCAAGAAG
CGTTTGAAACCTTGTACGATAGTTACATTGCCTTGCAAAATACTTTTGCGTCAACGTTATCGTCACATGTCAAAGGCCAT
AACTATTTAGCGAAAGTGCGTCACTATCGCTCAGCACGGGAAGCAGCCATTCTGCCACATAGCCTACCAACATCAGTATT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTGCCATTGTTGCATCGCTTTGTATCACTCCGCAAGCAAGTTTTGGGCG
TTGACGATGTGCACTCATACGACCTCTACGTACCGCTGGTCGATGAGATTGATTTTGATGTCACTTATGACAAAGCCAAA
GACATTGTGTTGGCCGCTTTGGCACCATTAGGACCAGACTACATTGCCGTGGTTAAAAAAGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGCAAGCGGACTGGCGCTTATTCGAGTGGCACCTATGACACGAACCCCTTTATTTTGTTGA
ATTGGCAAAATAACTTAAATAACGTCTACACTTTGGCCCATGAAATGGGACACTCGGTGCATTCTTATTTGACCCGCCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTGACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCTTATGTGTTGAATCAGTATCTTGATGGCTTTAAGGGCACGG
TGTTCCGACAGACCCAATTTGCAGAGTTTGAAGATTGGATTCATGAACAAAGTGCCGCTGGGGTGGCGTTAACAGCTGAC
GCGATGAGCACGTACTATGCAGCATTGAACCAGAAGTACTATGGGCCAGATCTCTTCCCGGATGAAGAAATCGCGTATGA
ATGGGCCCGTATTCCACATTTCTACTACAATTATTATGTCTATCAGTATGCCACTGGTGAAGCCGCAGCGACGACTTTGG
CTGACCGTATTTTGAACCAGAATGGGGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

99.161

0.532

Multiple sequence alignment