Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AB477_RS01680 Genome accession   NZ_CP020467
Coordinates   368193..369038 (+) Length   281 a.a.
NCBI ID   WP_001573568.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007896     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 363193..374038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB477_RS01660 (AB477_01665) - 363459..365300 (-) 1842 WP_000077311.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  AB477_RS01665 (AB477_01670) metC 365269..366429 (-) 1161 WP_000175858.1 cystathionine beta-lyase MetC -
  AB477_RS01670 (AB477_01675) - 366426..367529 (-) 1104 WP_000655687.1 PLP-dependent transferase -
  AB477_RS01680 (AB477_01685) spo0J 368193..369038 (+) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein Regulator
  AB477_RS01685 (AB477_01690) - 369192..370073 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  AB477_RS01690 (AB477_01695) - 370103..370306 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  AB477_RS01695 (AB477_01700) ychF 370318..371415 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  AB477_RS01700 (AB477_01705) - 371501..371692 (-) 192 WP_001052483.1 hypothetical protein -
  AB477_RS01710 (AB477_01715) rpsF 371936..372232 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  AB477_RS01715 (AB477_01720) ssbA 372253..372756 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  AB477_RS01720 (AB477_01725) rpsR 372808..373050 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32796.88 Da        Isoelectric Point: 10.1158

>NTDB_id=186891 AB477_RS01680 WP_001573568.1 368193..369038(+) (spo0J) [Staphylococcus aureus strain CFSAN007896]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIKQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=186891 AB477_RS01680 WP_001573568.1 368193..369038(+) (spo0J) [Staphylococcus aureus strain CFSAN007896]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CGCAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTAAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment