Detailed information NTG0186888

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC37_RS12920
• Genome accession: NZ_CP016321
• Coordinates: 2637019..2638011 (-)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_037
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2632019..2643011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC37_RS12900 (FORC37_2347)	recX	2632036..2632497 (-)	462	WP_038964353.1	recombination regulator RecX	-
FORC37_RS12905 (FORC37_2348)	recA	2632613..2633662 (-)	1050	WP_038941440.1	recombinase RecA	Machinery gene
FORC37_RS12910 (FORC37_2349)	pncC	2633795..2634298 (-)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
FORC37_RS12915 (FORC37_2350)	mutS	2634382..2636943 (+)	2562	WP_038941441.1	DNA mismatch repair protein MutS	-
FORC37_RS12920 (FORC37_2351)	rpoS	2637019..2638011 (-)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
FORC37_RS12925 (FORC37_2352)	-	2638092..2639018 (-)	927	WP_088428082.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC37_RS12930 (FORC37_2353)	-	2639032..2639658 (-)	627	WP_088428083.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC37_RS12935 (FORC37_2354)	surE	2639661..2640428 (-)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
FORC37_RS12940 (FORC37_2355)	truD	2640434..2641477 (-)	1044	WP_088428084.1	tRNA pseudouridine(13) synthase TruD	-
FORC37_RS12945 (FORC37_2356)	ispF	2641513..2641989 (-)	477	WP_088428085.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC37_RS12950 (FORC37_2357)	ispD	2641986..2642699 (-)	714	WP_088428086.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC37_RS12955 (FORC37_2358)	ftsB	2642699..2642980 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=186888 FORC37_RS12920 WP_017420278.1 2637019..2638011(-) (rpoS) [Vibrio vulnificus strain FORC_037]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=186888 FORC37_RS12920 WP_017420278.1 2637019..2638011(-) (rpoS) [Vibrio vulnificus strain FORC_037]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTTGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833