Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC37_RS12800 Genome accession   NZ_CP016321
Coordinates   2615124..2615642 (-) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain FORC_037     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2610124..2620642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS12775 (FORC37_2330) rimM 2610209..2610757 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  FORC37_RS12780 (FORC37_2331) rpsP 2610773..2611021 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC37_RS12785 (FORC37_2332) ffh 2611317..2612693 (-) 1377 WP_011079540.1 signal recognition particle protein -
  FORC37_RS12790 (FORC37_2333) - 2612907..2613701 (+) 795 WP_011079539.1 cytochrome C assembly family protein -
  FORC37_RS12795 (FORC37_2334) - 2613788..2615065 (+) 1278 WP_038941428.1 HlyC/CorC family transporter -
  FORC37_RS12800 (FORC37_2335) luxS 2615124..2615642 (-) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  FORC37_RS12805 (FORC37_2336) - 2615693..2616325 (-) 633 WP_088428080.1 hypothetical protein -
  FORC37_RS12810 (FORC37_2337) gshA 2616336..2617901 (-) 1566 WP_039561463.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=186885 FORC37_RS12800 WP_017421185.1 2615124..2615642(-) (luxS) [Vibrio vulnificus strain FORC_037]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=186885 FORC37_RS12800 WP_017421185.1 2615124..2615642(-) (luxS) [Vibrio vulnificus strain FORC_037]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTATTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment