Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC37_RS06440 Genome accession   NZ_CP016321
Coordinates   1354151..1355572 (-) Length   473 a.a.
NCBI ID   WP_053542688.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349151..1360572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS06410 (FORC37_1222) - 1349553..1350320 (+) 768 WP_017419940.1 phospholipase A -
  FORC37_RS06415 (FORC37_1223) - 1350560..1350949 (+) 390 WP_017419941.1 hypothetical protein -
  FORC37_RS06420 (FORC37_1224) - 1351043..1352146 (-) 1104 WP_017790524.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC37_RS06425 (FORC37_1225) - 1352349..1352741 (-) 393 WP_088427659.1 SulA-like leucine-rich domain-containing protein -
  FORC37_RS06430 (FORC37_1226) - 1353054..1353731 (-) 678 WP_045588947.1 LrgB family protein -
  FORC37_RS06435 (FORC37_1227) - 1353734..1354105 (-) 372 WP_045588948.1 CidA/LrgA family protein -
  FORC37_RS06440 (FORC37_1228) sbcB 1354151..1355572 (-) 1422 WP_053542688.1 exodeoxyribonuclease I Machinery gene
  FORC37_RS06445 (FORC37_1229) - 1355646..1356344 (-) 699 WP_088427660.1 oxidoreductase -
  FORC37_RS06450 (FORC37_1232) - 1356850..1358088 (+) 1239 WP_088427661.1 hypothetical protein -
  FORC37_RS06455 (FORC37_1233) cobT 1358278..1359306 (+) 1029 WP_088427662.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC37_RS06460 (FORC37_1234) - 1359308..1360075 (+) 768 WP_088427663.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54772.02 Da        Isoelectric Point: 5.1722

>NTDB_id=186875 FORC37_RS06440 WP_053542688.1 1354151..1355572(-) (sbcB) [Vibrio vulnificus strain FORC_037]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=186875 FORC37_RS06440 WP_053542688.1 1354151..1355572(-) (sbcB) [Vibrio vulnificus strain FORC_037]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTAATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGACCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTACTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTGGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACTCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAACTAGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAACACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCTGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment