Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   B4V05_RS06460 Genome accession   NZ_CP020459
Coordinates   1268941..1271253 (-) Length   770 a.a.
NCBI ID   WP_076632066.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1263941..1276253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS06435 (B4V05_06425) - 1265040..1266785 (-) 1746 WP_056947092.1 ABC transporter ATP-binding protein -
  B4V05_RS06440 (B4V05_06430) - 1266927..1267157 (-) 231 WP_011374970.1 YneF family protein -
  B4V05_RS06445 (B4V05_06435) - 1267238..1267480 (-) 243 WP_016265356.1 DUF896 domain-containing protein -
  B4V05_RS06450 (B4V05_06440) dinR/lexA 1267615..1268229 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  B4V05_RS06455 (B4V05_06445) - 1268399..1268917 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  B4V05_RS06460 (B4V05_06450) recJ 1268941..1271253 (-) 2313 WP_076632066.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  B4V05_RS06465 (B4V05_06455) galE 1271398..1272390 (+) 993 WP_011374975.1 UDP-glucose 4-epimerase GalE -
  B4V05_RS06470 (B4V05_06460) - 1272476..1272841 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  B4V05_RS06475 (B4V05_06465) - 1272858..1273184 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  B4V05_RS06480 (B4V05_06470) - 1273235..1275070 (-) 1836 WP_076632065.1 WxL domain-containing protein -
  B4V05_RS06485 (B4V05_06475) - 1275060..1275455 (-) 396 WP_016265361.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 84855.67 Da        Isoelectric Point: 4.5390

>NTDB_id=186868 B4V05_RS06460 WP_076632066.1 1268941..1271253(-) (recJ) [Latilactobacillus sakei strain FAM18311]
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLHDPYALHDMQKAIDRIQEAIVNG
EKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEH
GVDVVVTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTL
VSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLTTLDDEEAVEQAQFIEQQNKK
RQGLVQEITATAMTIAETTENQASATLVIAHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQAAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDLYQALQQLAPFGSD
NPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRGQTTLQLMVKD
LATSGQVILDQRSNRLTKQLFQSTGDYVFFNDKMREQLQSYLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQ
QQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAVYLKLQLPLMIFMLQVFFDLGFVRIERGLIT
AELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWLATLPAVANR

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=186868 B4V05_RS06460 WP_076632066.1 1268941..1271253(-) (recJ) [Latilactobacillus sakei strain FAM18311]
TTGGAAGCACAATATGAATGGCAATTAAAACCAGTACCAACTGAAGATGAATTACAAACAATTACAAAAGACAATCCGCT
ACCCAAGGCTGCGGCCCAACTTTTGTGGCAACGTGGCTTGCGGGATGCAGAGCAGATCAATGATTTTATGAATCCCAATG
TCGGTCAACTTCACGATCCATACGCTTTGCATGATATGCAAAAGGCGATTGATCGAATTCAAGAAGCGATTGTGAACGGC
GAAAAAATTACGATTTATGGCGATTATGACGCGGACGGGATCACAAGTACCACTTTGATGAAGGAAACTTTAGACGACTT
AGGTGCCGATGTTGAAGTCTATGTGCCTAATCGTTTTAAGGATGGCTACGGGCCTAATTTAGAAGCTTATAAACGCTTGA
TTGAAAATGGCACCCAATTAATTGTGACCGTCGATAACGGGGTGAGTGGCTTAGAACCAATCGCTTACGCGCAAGAACAC
GGTGTTGACGTGGTCGTGACCGATCACCATGAATTACCATCAGAATTACCCAACGCAGTGGCGATTGTGCATCCCAGACA
TCCAGAAGGGCAATATCCTTTTGGCGAACTCTGTGGGGTCGGTGTGGCGTTTAAAGTGGCGACTGCTTTATTAGAAGAGA
TTCCTTACGATAAATTAGATTTAGCCGCAATCGGGACGGTTTGTGATATCGTCCCCCTAGTTGATGAAAACCGAACGTTG
GTTAGTTTGGGCTTACAACAATTACAAAATACTGATCGACCAGGCTTGGTTGCATTATGTCAATCAGCCGGCTTAGAACA
AGCGACACTAGATGCCACTAATATTGGTTTTGGGATTGGTCCCCGTTTAAACGCAATTGGTCGTTTAGGCGATGCGACCC
TTGGTGTGCAATTGTTGACGACACTTGATGACGAAGAAGCAGTTGAACAGGCACAGTTTATTGAACAACAAAATAAAAAA
CGCCAAGGGCTAGTGCAAGAAATTACAGCAACGGCAATGACAATTGCTGAAACAACGGAAAATCAAGCGAGTGCAACCTT
AGTTATTGCCCATGAAGGTTGGCACGAAGGGGTGCTAGGGATTGTAGCTAGTCACGTTGTTGAACAGACCGGTAAACCAA
CCTTAGTCTTGACGATTGATCCGGAAACTGGTTTAGCTAAAGGCTCTGGCCGTAGTGTGACAGCTTTTCATTTATTTAAA
GCGTTAGATGCCCACCGTGAATTATTGGTTCATTTTGGTGGCCATCACATGGCAGTTGGCTTGACTGCTAAGGTTGATCA
ATTAGCGCTGATTCAAGCTGCAATGAACGAGTATGCGCAAGTTAATCAGTTAGATTTAACGGGACGCCAACCATTACCAG
TTGATTTGGCGCTGACGTTGGCTGACATTACGCCTGATTTATACCAAGCATTACAACAACTGGCACCGTTTGGCAGTGAT
AATCCAGAACCGTTGATTGAACTTAGTGCGCCCCAGTTAGCCGATGTCAAACAAATTGGTGCTGATCAGAAGCATTTGAA
GATGATGGCGGTTGATCAACAACAACAATTAGCGGTTTTAGCTTTCAATAAAGGGGCTTTGATGCCCGATTTAACTGCCG
CTGAAGATGTGAAATTAGTCGGAAGTTTGAGTGAGAATACTTGGCGTGGCCAGACGACGTTGCAATTAATGGTAAAAGAC
CTTGCCACGAGTGGACAAGTCATACTTGATCAGCGTAGCAATCGCCTGACAAAACAATTATTCCAATCAACAGGCGACTA
CGTCTTTTTTAATGATAAAATGCGCGAGCAACTGCAGTCTTATTTACCGGCAGGGAGTCAGGCGCTGTTAGCGACCGATG
AACAAGTTGCTACTAGCCAAGAGTTAATTGTAGTTGATGAACCGGCTGATTTAACTGCTTTTGAACAATTTTATCAACAA
CAACAGGCCGCTAAATTAAGCTTGATTTTTTATGCTAAACACTCTGCTTACTTAGAAGGAATGCCGACAAAACAGCAGTT
TGCGACTTTCTTAGTCTACTTACGGAAGCACCCAAATATCGAAAAAGCGCGGTTAGCTGAATTAGCGGTGTATTTAAAAT
TACAATTACCGCTAATGATTTTCATGTTGCAGGTGTTTTTTGACCTCGGATTTGTTAGAATAGAACGTGGTCTGATTACG
GCCGAGTTACAACCTGAAAAGCATGCACTGGAAAGTGCACCAAGTTATCAAAAACGATTAGCTAAAATTGAAATGGAAAA
ACAGCTTGTTTATTCAACCTTTACCGAGGTGAAAGACTGGCTAGCAACTCTCCCAGCAGTAGCAAATCGCTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(317-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-761)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

40.21

98.831

0.397
  recJ Bacillus subtilis subsp. subtilis str. 168

37.371

100

0.377