Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   B4V05_RS04845 Genome accession   NZ_CP020459
Coordinates   949086..950144 (+) Length   352 a.a.
NCBI ID   WP_025015780.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944086..955144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS04820 (B4V05_04810) trhA 944305..944943 (+) 639 WP_061827014.1 PAQR family membrane homeostasis protein TrhA -
  B4V05_RS04825 (B4V05_04815) - 944972..945814 (+) 843 WP_076632506.1 DegV family protein -
  B4V05_RS04830 (B4V05_04820) - 945942..946523 (+) 582 WP_076632505.1 TetR/AcrR family transcriptional regulator -
  B4V05_RS04835 (B4V05_04825) - 946525..947526 (+) 1002 WP_076632504.1 NADP-dependent oxidoreductase -
  B4V05_RS04840 (B4V05_04830) - 947557..948390 (+) 834 WP_076632503.1 alpha/beta fold hydrolase -
  B4V05_RS04845 (B4V05_04835) xerS 949086..950144 (+) 1059 WP_025015780.1 tyrosine recombinase XerS Machinery gene
  B4V05_RS04850 (B4V05_04840) thiT 950358..950960 (+) 603 WP_011374670.1 energy-coupled thiamine transporter ThiT -
  B4V05_RS04855 (B4V05_04845) - 951000..952793 (-) 1794 WP_025015778.1 heavy metal translocating P-type ATPase -
  B4V05_RS04860 (B4V05_04850) - 952894..953247 (-) 354 WP_025015777.1 hypothetical protein -
  B4V05_RS04865 (B4V05_04855) - 953304..954227 (-) 924 WP_011374673.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40719.63 Da        Isoelectric Point: 9.1623

>NTDB_id=186847 B4V05_RS04845 WP_025015780.1 949086..950144(+) (xerS) [Latilactobacillus sakei strain FAM18311]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=186847 B4V05_RS04845 WP_025015780.1 949086..950144(+) (xerS) [Latilactobacillus sakei strain FAM18311]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.067

100

0.466