Detailed information
Bioinformatically predicted
Overview
| Name | recU | Type | Machinery gene |
| Locus tag | B4V05_RS04595 | Genome accession | NZ_CP020459 |
| Coordinates | 900934..901566 (-) | Length | 210 a.a. |
| NCBI ID | WP_035146917.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain FAM18311 | ||
| Function | plasmid transformation; homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 895934..906566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4V05_RS04580 (B4V05_04570) | - | 897242..897865 (+) | 624 | WP_011374617.1 | DnaD domain protein | - |
| B4V05_RS04585 (B4V05_04575) | nth | 897889..898539 (+) | 651 | WP_035146924.1 | endonuclease III | - |
| B4V05_RS04590 (B4V05_04580) | - | 898624..900927 (-) | 2304 | WP_076631859.1 | PBP1A family penicillin-binding protein | - |
| B4V05_RS04595 (B4V05_04585) | recU | 900934..901566 (-) | 633 | WP_035146917.1 | Holliday junction resolvase RecU | Machinery gene |
| B4V05_RS04600 (B4V05_04590) | - | 901642..902202 (+) | 561 | WP_016265078.1 | DUF1273 domain-containing protein | - |
| B4V05_RS04605 (B4V05_04595) | gpsB | 902282..902662 (+) | 381 | WP_011374622.1 | cell division regulator GpsB | - |
| B4V05_RS04615 (B4V05_04605) | - | 903152..904303 (+) | 1152 | WP_011374623.1 | THUMP domain-containing class I SAM-dependent RNA methyltransferase | - |
| B4V05_RS04620 (B4V05_04610) | - | 904406..905359 (+) | 954 | WP_011374624.1 | phosphoglycerate dehydrogenase | - |
| B4V05_RS04625 (B4V05_04615) | - | 905414..905803 (-) | 390 | WP_011374625.1 | DUF1398 domain-containing protein | - |
Sequence
Protein
Download Length: 210 a.a. Molecular weight: 24155.41 Da Isoelectric Point: 9.4518
>NTDB_id=186846 B4V05_RS04595 WP_035146917.1 900934..901566(-) (recU) [Latilactobacillus sakei strain FAM18311]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPANLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPANLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV
Nucleotide
Download Length: 633 bp
>NTDB_id=186846 B4V05_RS04595 WP_035146917.1 900934..901566(-) (recU) [Latilactobacillus sakei strain FAM18311]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATATGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCAACAACGGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGCGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTTCAACGTTTATTTGTGTATCCGGCAAACTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATATGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCAACAACGGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGCGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTTCAACGTTTATTTGTGTATCCGGCAAACTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recU | Bacillus subtilis subsp. subtilis str. 168 |
49.246 |
94.762 |
0.467 |