Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   B4V05_RS03180 Genome accession   NZ_CP020459
Coordinates   618990..619718 (+) Length   242 a.a.
NCBI ID   WP_011374338.1    Uniprot ID   Q38XZ6
Organism   Latilactobacillus sakei strain FAM18311     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 613990..624718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS03160 (B4V05_03150) - 615909..616877 (+) 969 WP_011374334.1 3'-5' exoribonuclease YhaM family protein -
  B4V05_RS03165 (B4V05_03155) - 616938..617846 (-) 909 WP_049762126.1 peptidylprolyl isomerase PrsA -
  B4V05_RS03170 (B4V05_03160) - 618012..618338 (-) 327 WP_011374336.1 YtxH domain-containing protein -
  B4V05_RS03175 (B4V05_03165) - 618341..618769 (-) 429 WP_011374337.1 HIT family protein -
  B4V05_RS03180 (B4V05_03170) pptA 618990..619718 (+) 729 WP_011374338.1 ABC transporter ATP-binding protein Regulator
  B4V05_RS03185 (B4V05_03175) - 619721..620920 (+) 1200 WP_041820776.1 ABC transporter permease -
  B4V05_RS03190 (B4V05_03180) - 621053..621847 (+) 795 WP_011374340.1 phosphotransferase family protein -
  B4V05_RS03195 (B4V05_03185) trmB 622052..622693 (+) 642 WP_011374341.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  B4V05_RS03200 (B4V05_03190) - 622765..623091 (-) 327 WP_011374342.1 hypothetical protein -
  B4V05_RS03205 (B4V05_03195) - 623214..623534 (+) 321 WP_011374343.1 thioredoxin family protein -
  B4V05_RS03210 (B4V05_03200) ytpR 623553..624182 (+) 630 WP_076632397.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26944.29 Da        Isoelectric Point: 5.0678

>NTDB_id=186834 B4V05_RS03180 WP_011374338.1 618990..619718(+) (pptA) [Latilactobacillus sakei strain FAM18311]
MSLEINQLTGGYAHVPVLQEVSFTVPNQQVVGLIGLNGAGKSTTIKHIIGLLMPQKGTITLNGVTLQSNPDQYRQSMAYV
PETPVLYPELTLREHLELAMMAYDLDFEKTWAKAMVLLKKFRLDNKLDWFPVHFSKGMRQKVMIVNAFMTDADLFIIDEP
FTGLDPLAIHDLLDIIADKKAAGAAILMSTHILATAQQYADSFVLLNQGKVRTTGTLEELKAEFNMADANLDDIYLQMTK
EG

Nucleotide


Download         Length: 729 bp        

>NTDB_id=186834 B4V05_RS03180 WP_011374338.1 618990..619718(+) (pptA) [Latilactobacillus sakei strain FAM18311]
ATGAGTTTAGAAATTAACCAATTAACGGGTGGTTACGCCCACGTACCAGTGCTCCAAGAAGTAAGTTTTACGGTTCCCAA
TCAACAGGTTGTCGGCTTGATTGGCTTAAACGGGGCTGGTAAATCAACGACCATTAAACATATTATCGGATTATTAATGC
CGCAAAAGGGTACGATTACGCTTAATGGCGTCACGTTGCAATCTAATCCGGATCAATACCGCCAAAGTATGGCTTACGTG
CCGGAAACGCCAGTCCTTTATCCCGAGTTAACATTACGAGAACATCTGGAACTAGCGATGATGGCTTACGATTTAGATTT
CGAGAAGACTTGGGCCAAAGCGATGGTGTTATTGAAGAAGTTCCGACTCGACAATAAGCTGGACTGGTTCCCAGTTCATT
TTTCAAAAGGGATGCGTCAAAAAGTGATGATCGTCAACGCTTTTATGACTGACGCCGATTTATTCATCATTGATGAACCT
TTTACAGGTCTTGATCCACTCGCCATTCACGATTTATTGGACATTATTGCTGATAAAAAGGCGGCGGGGGCGGCTATTTT
GATGTCGACCCATATTTTGGCCACGGCGCAACAATACGCCGATTCTTTTGTCCTATTAAATCAAGGTAAGGTTCGAACAA
CTGGGACGCTTGAAGAACTGAAAGCAGAATTTAACATGGCAGATGCAAACTTAGATGATATCTATTTGCAAATGACGAAA
GAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.983

98.347

0.57
  pptA Streptococcus thermophilus LMD-9

56.723

98.347

0.558

Multiple sequence alignment