Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   B4V05_RS01745 Genome accession   NZ_CP020459
Coordinates   363376..365334 (+) Length   652 a.a.
NCBI ID   WP_076631955.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358376..370334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS01735 (B4V05_01725) - 359921..360727 (+) 807 WP_076631953.1 TIGR00282 family metallophosphoesterase -
  B4V05_RS01740 (B4V05_01730) hexA 360749..363352 (+) 2604 WP_076631954.1 DNA mismatch repair protein MutS Machinery gene
  B4V05_RS01745 (B4V05_01735) hexB 363376..365334 (+) 1959 WP_076631955.1 DNA mismatch repair endonuclease MutL Machinery gene
  B4V05_RS01750 (B4V05_01740) - 365334..365879 (+) 546 WP_011374073.1 Maf family protein -
  B4V05_RS01755 (B4V05_01745) - 365892..366455 (+) 564 WP_011374074.1 TIGR00730 family Rossman fold protein -
  B4V05_RS01760 (B4V05_01750) ruvA 366866..367477 (+) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  B4V05_RS01765 (B4V05_01755) ruvB 367490..368497 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B4V05_RS01770 (B4V05_01760) queA 368512..369543 (+) 1032 WP_076631957.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  B4V05_RS01775 (B4V05_01765) - 369570..370091 (+) 522 WP_076631958.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72599.03 Da        Isoelectric Point: 5.5231

>NTDB_id=186822 B4V05_RS01745 WP_076631955.1 363376..365334(+) (hexB) [Latilactobacillus sakei strain FAM18311]
MGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGDGIEPEDVPVAFKRHATSK
IATRQDLFKIQSLGFRGEALASIASVSDLTIETATADSLGTFAHFKGGLLEEQKTNPIRPGTAITVRDLFFNTPARLKYV
KTFQTELANIVDIVNRLAMSHPQIAFTLTNDDHLLLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPE
LTRATRNYLSILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVHPTKQEVRLSKETALMTLIEGA
IKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQERRHPSGTVRPVSPMPIPVKTVTPEIAETETPLAAPTAKAPA
ITPERPLFEQPQALAEWDQKYATEAVGKPFGDQVVDETDESEENVVEPTVRFPELRYIGQLHSTFLLAEGEDGFYILDQH
AAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENFGQNSFVVHSHPTWIGQGQEEMT
IRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHLDDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMFK
RIQEPHHSWEGE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=186822 B4V05_RS01745 WP_076631955.1 363376..365334(+) (hexB) [Latilactobacillus sakei strain FAM18311]
ATGGGGAAAATTCATGAACTGTCGGAAATTCTAAGTAATCAAATTGCGGCGGGGGAAGTGATTGAACGCCCTGCCTCAGT
GGTCAAGGAATTAGTTGAAAACGCGATTGATGCTAATAGTACGCAAGTCGATATCGTTGTTGAACAGGCCGGTTTACAGA
TGATTCAAGTGATCGATAACGGTGACGGGATTGAACCAGAAGATGTGCCAGTCGCCTTTAAGCGGCATGCCACCAGTAAG
ATTGCGACTCGGCAAGATTTGTTCAAGATTCAATCGCTAGGGTTTCGGGGTGAAGCGTTAGCTAGTATCGCGTCCGTTTC
CGATTTAACGATTGAAACGGCAACTGCGGACTCTCTAGGAACCTTTGCTCATTTTAAGGGTGGTCTGTTAGAGGAACAAA
AAACAAATCCGATTCGACCGGGGACGGCGATTACGGTGCGGGATTTATTCTTTAATACACCGGCACGATTGAAATACGTG
AAGACTTTTCAAACCGAATTGGCGAATATCGTCGATATCGTCAATCGGCTAGCAATGAGTCATCCACAGATTGCCTTTAC
GCTAACCAATGATGACCATCTACTTTTAAAAACGGCCGGCAACAATGATTTAAAACAAACGATTGCTGGTATTTATGGCG
TCACCATGGCCAAGAAACTCTTAGCCGTGAGTGCTTCGGATTTAGATTTTAAACTAACGGGCTACGTGTCATTGCCGGAA
TTAACGCGGGCAACGCGCAATTATTTGTCGATTTTAATTAATGGTCGGTTTATTAAAAATTACCAATTGAATAAGGCCAT
TATCAAGGGCTACGGTTCTAAATTGATGGTCGGACGCTATCCAATCGCCGTCTTAGCGATTGAGATGGATCCGCTATTGA
TCGATGTCAACGTGCATCCAACAAAACAGGAAGTCCGCTTAAGCAAAGAAACTGCCTTGATGACCTTGATTGAAGGGGCA
ATCAAAGAAAGACTGGCAACCGAGAATTTAATTCCAGATGCCATGCAGAATTTGAAACGGACCAAGACGGTAGATGTTGA
TCAGCTCCAGATGAATTTAAACCAAATTACACAAGAACGACGGCACCCAAGCGGTACGGTGCGACCAGTCAGTCCAATGC
CAATCCCAGTAAAAACGGTGACACCCGAAATTGCGGAAACCGAAACGCCGTTAGCCGCACCAACTGCTAAAGCGCCGGCG
ATTACACCGGAGCGGCCCTTATTTGAGCAACCCCAGGCATTGGCCGAGTGGGATCAGAAGTACGCGACAGAAGCGGTTGG
AAAGCCGTTTGGTGATCAAGTGGTAGACGAAACGGACGAAAGTGAAGAAAACGTAGTCGAACCCACTGTTCGGTTCCCAG
AGTTACGCTACATTGGGCAACTGCATAGTACTTTCTTATTAGCGGAAGGCGAAGATGGCTTTTATATCTTGGATCAACAC
GCTGCGCAAGAACGGATTAAGTACGAGTATTACCGAGAAAAAATTGGGGAAGTCAGCACCTCTGTGCAAAACTTGTTAGT
ACCACTTGTTTTGGAATACCCGAATAGTGATGCGCTAAAGATTCAGGAAAAAACTGAACTCTTGGCGTCAGTCGGAATTC
AATTAGAAAATTTCGGGCAGAATAGTTTTGTGGTCCACAGTCACCCAACTTGGATTGGACAGGGACAAGAGGAAATGACG
ATTCGTGGGATGATTGACGATGTTTTAAAAGACGGTCGCATTAGCATTGCCCAATTCCGTGAGAAGACGGCGATTATGAT
GAGCTGTAAGCAATCGATTAAAGCGCACCATCATTTAGATGATGCCCAGGCCAAAGCGCTTTTAGCCGATCTAGCGAAGA
CCGAGAATCCGTTTAATTGTCCCCACGGACGCCCGGTTTTGATTCACTACACGCAAAAAGATTTGGAAAAGATGTTTAAA
CGGATTCAAGAACCACATCATAGTTGGGAGGGCGAATAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-325)

MutL C terminal dimerisation domain (MutL_C)

(455-599)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

50.152

100

0.505

Multiple sequence alignment