Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   B4V05_RS00625 Genome accession   NZ_CP020459
Coordinates   127494..129785 (+) Length   763 a.a.
NCBI ID   WP_076632045.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122494..134785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS00600 (B4V05_00595) - 122874..123332 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  B4V05_RS00605 (B4V05_00600) - 123698..124600 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  B4V05_RS00610 (B4V05_00605) - 124674..126512 (-) 1839 WP_076632046.1 cation:proton antiporter family protein -
  B4V05_RS00615 (B4V05_00610) crcB 126649..127056 (+) 408 WP_035146059.1 fluoride efflux transporter CrcB -
  B4V05_RS00620 (B4V05_00615) - 127053..127400 (+) 348 WP_056948605.1 fluoride efflux transporter FluC -
  B4V05_RS00625 (B4V05_00620) helD 127494..129785 (+) 2292 WP_076632045.1 RNA polymerase recycling motor HelD Machinery gene
  B4V05_RS00630 (B4V05_00625) coaA 129893..130822 (+) 930 WP_016264412.1 type I pantothenate kinase -
  B4V05_RS00635 (B4V05_00630) guaA 131004..132542 (+) 1539 WP_172952568.1 glutamine-hydrolyzing GMP synthase -
  B4V05_RS00640 (B4V05_00635) - 132670..133224 (+) 555 WP_076632005.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87792.78 Da        Isoelectric Point: 6.3690

>NTDB_id=186813 B4V05_RS00625 WP_076632045.1 127494..129785(+) (helD) [Latilactobacillus sakei strain FAM18311]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQYHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADELSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=186813 B4V05_RS00625 WP_076632045.1 127494..129785(+) (helD) [Latilactobacillus sakei strain FAM18311]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGCCAAATTAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATTGCGTTTTTACTCTATCGCTATCGGGGGAATTTAGATTCGAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGCGGTCCAGAGCCTCTTTGATCAATTCGAAACACCAGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAGTACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTAATTACTAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCCACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCCGACTGGGTGACTGAACAAGCCGAGAATATGAGTGATGAAGAAATTCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGCGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAATACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGTGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAGGGTAACAGCACAAATCTCTTGCAACAAGTGCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATATCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATGAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATCCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGACGCACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.126

100

0.389