Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   A6J87_RS07735 Genome accession   NZ_CP020451
Coordinates   1505649..1506386 (+) Length   245 a.a.
NCBI ID   WP_021143758.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500649..1511386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS07720 (A6J87_07690) - 1501029..1502278 (-) 1250 Protein_1459 ISL3 family transposase -
  A6J87_RS07725 (A6J87_07695) tehB 1502456..1503334 (-) 879 WP_070576950.1 SAM-dependent methyltransferase TehB -
  A6J87_RS07730 (A6J87_07700) - 1504113..1505435 (-) 1323 WP_070576952.1 matrixin family metalloprotease -
  A6J87_RS07735 (A6J87_07705) comE/comE1 1505649..1506386 (+) 738 WP_021143758.1 LytTR family DNA-binding domain-containing protein Regulator
  A6J87_RS07740 (A6J87_07710) - 1506698..1507876 (+) 1179 WP_037598353.1 sensor histidine kinase -
  A6J87_RS07745 (A6J87_07715) - 1507988..1509367 (+) 1380 WP_080611859.1 hypothetical protein -
  A6J87_RS07750 (A6J87_07720) rpsP 1509532..1509804 (+) 273 WP_002884675.1 30S ribosomal protein S16 -
  A6J87_RS07755 (A6J87_07725) - 1509816..1510064 (+) 249 WP_002884680.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28132.10 Da        Isoelectric Point: 4.7169

>NTDB_id=186784 A6J87_RS07735 WP_021143758.1 1505649..1506386(+) (comE/comE1) [Streptococcus salivarius strain FDAARGOS_259]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEENESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=186784 A6J87_RS07735 WP_021143758.1 1505649..1506386(+) (comE/comE1) [Streptococcus salivarius strain FDAARGOS_259]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATTGCTTTTGTTACAGCTTACTCGGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCCTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACACACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGAAAACGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.449

99.184

0.371

Multiple sequence alignment