Detailed information
Bioinformatically predicted
Overview
| Name | luxP | Type | Regulator |
| Locus tag | VSVS12_RS18885 | Genome accession | NZ_CP016308 |
| Coordinates | 913479..914576 (+) | Length | 365 a.a. |
| NCBI ID | WP_065431704.1 | Uniprot ID | - |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | autoinducer sensor (predicted from homology) Competence regulation |
||
Genomic Context
Location: 908479..919576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS18850 (VSVS12_03836) | - | 908698..909291 (+) | 594 | WP_065431698.1 | OmpA family protein | - |
| VSVS12_RS18855 (VSVS12_03837) | glpK | 909402..910907 (+) | 1506 | WP_065431699.1 | glycerol kinase GlpK | - |
| VSVS12_RS18860 (VSVS12_03838) | - | 911033..911263 (-) | 231 | WP_065431700.1 | YgjV family protein | - |
| VSVS12_RS18865 (VSVS12_03839) | - | 911665..911985 (-) | 321 | WP_005599404.1 | DUF496 family protein | - |
| VSVS12_RS18870 (VSVS12_03840) | - | 912176..912370 (+) | 195 | WP_065431701.1 | hypothetical protein | - |
| VSVS12_RS18875 (VSVS12_03841) | - | 912404..913060 (+) | 657 | WP_065431702.1 | YceH family protein | - |
| VSVS12_RS18880 (VSVS12_03842) | - | 913053..913376 (+) | 324 | WP_065431703.1 | GIY-YIG nuclease family protein | - |
| VSVS12_RS18885 (VSVS12_03843) | luxP | 913479..914576 (+) | 1098 | WP_065431704.1 | autoinducer 2-binding periplasmic protein LuxP | Regulator |
| VSVS12_RS18890 (VSVS12_03844) | luxQ | 914576..917143 (+) | 2568 | WP_065431705.1 | quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ | - |
| VSVS12_RS18895 (VSVS12_03845) | - | 917182..917847 (-) | 666 | WP_065431706.1 | PilZ domain-containing protein | - |
| VSVS12_RS18900 (VSVS12_03846) | glpD | 917908..919464 (-) | 1557 | WP_065431707.1 | glycerol-3-phosphate dehydrogenase | - |
Sequence
Protein
Download Length: 365 a.a. Molecular weight: 41256.30 Da Isoelectric Point: 5.9664
>NTDB_id=186776 VSVS12_RS18885 WP_065431704.1 913479..914576(+) (luxP) [Vibrio scophthalmi strain VS-12]
MYKTALATLLSVFSSVALAHSTQVLNGYWEYDEYLSSHPSQKALTDKLAQAVREHPAAINKVQDRPISISVVYPGQQISD
YWIRNIKAFEARLDKLGIKYEINQVFTRPNVDVRQQSLSLLEAIQNNSDYLIFTLDTTRHRKFIEHVISSTDTKLILQNI
TTPVRAWDDHHPFMYVGFDHQRGTQKIESFYKQKTAQGSKYSVLYFSEGYISDARGDTFIEEMSHHDGYKLSSSYYTKAT
RESGFNAAISAIEKDPEISFIYACSTDVALGAVDALKQLKRGDILVNGWGGGTAELEAIEQGDIDVTVMRMNDDTGIAMA
EAIKWDLEGKQVPHVYSGDFEVVTSADSGEKIDRLKRRAFRYSDQ
MYKTALATLLSVFSSVALAHSTQVLNGYWEYDEYLSSHPSQKALTDKLAQAVREHPAAINKVQDRPISISVVYPGQQISD
YWIRNIKAFEARLDKLGIKYEINQVFTRPNVDVRQQSLSLLEAIQNNSDYLIFTLDTTRHRKFIEHVISSTDTKLILQNI
TTPVRAWDDHHPFMYVGFDHQRGTQKIESFYKQKTAQGSKYSVLYFSEGYISDARGDTFIEEMSHHDGYKLSSSYYTKAT
RESGFNAAISAIEKDPEISFIYACSTDVALGAVDALKQLKRGDILVNGWGGGTAELEAIEQGDIDVTVMRMNDDTGIAMA
EAIKWDLEGKQVPHVYSGDFEVVTSADSGEKIDRLKRRAFRYSDQ
Nucleotide
Download Length: 1098 bp
>NTDB_id=186776 VSVS12_RS18885 WP_065431704.1 913479..914576(+) (luxP) [Vibrio scophthalmi strain VS-12]
ATGTATAAAACGGCTCTAGCTACGCTACTGTCTGTCTTCTCGTCCGTCGCGTTAGCGCATTCAACTCAGGTGTTAAACGG
CTATTGGGAATACGATGAATATTTGTCGTCTCATCCAAGTCAAAAGGCCTTAACGGATAAGCTCGCCCAAGCGGTGAGAG
AGCATCCTGCCGCTATCAATAAAGTGCAAGATAGACCAATCTCAATCTCGGTGGTCTATCCCGGACAGCAAATCTCAGAC
TACTGGATTCGAAATATCAAAGCGTTTGAAGCTCGTTTAGATAAGTTAGGTATTAAGTATGAGATTAATCAGGTGTTTAC
TCGACCGAATGTCGATGTACGACAGCAAAGCTTGTCACTGCTTGAAGCGATTCAGAATAATTCTGATTACCTCATTTTTA
CACTAGATACCACTCGCCATCGAAAATTTATCGAACACGTGATTAGCTCGACCGACACTAAACTTATTTTACAGAATATC
ACCACGCCAGTGCGCGCTTGGGATGATCATCACCCATTTATGTATGTCGGTTTTGATCATCAGCGAGGTACGCAAAAAAT
CGAGAGTTTCTACAAGCAAAAAACAGCGCAAGGCAGTAAATACTCGGTACTGTATTTTTCTGAAGGCTATATAAGCGATG
CGCGCGGCGATACTTTCATTGAGGAGATGAGTCACCACGATGGTTACAAGTTAAGTTCATCCTATTACACCAAAGCGACG
CGCGAGTCGGGTTTTAATGCCGCGATCAGTGCAATTGAAAAAGACCCAGAGATTTCTTTTATCTATGCGTGTTCAACCGA
TGTCGCACTGGGTGCCGTTGATGCTCTGAAACAGCTTAAACGAGGCGATATTTTGGTTAATGGCTGGGGGGGAGGCACTG
CTGAGTTAGAGGCGATTGAACAAGGTGATATTGATGTGACGGTGATGCGTATGAACGATGACACCGGCATAGCGATGGCG
GAGGCGATTAAGTGGGACTTAGAAGGTAAGCAGGTTCCACATGTTTATTCGGGTGATTTTGAAGTGGTAACGAGTGCCGA
CAGCGGTGAAAAAATCGATCGCTTGAAGCGTCGTGCATTTAGGTACTCAGACCAATAA
ATGTATAAAACGGCTCTAGCTACGCTACTGTCTGTCTTCTCGTCCGTCGCGTTAGCGCATTCAACTCAGGTGTTAAACGG
CTATTGGGAATACGATGAATATTTGTCGTCTCATCCAAGTCAAAAGGCCTTAACGGATAAGCTCGCCCAAGCGGTGAGAG
AGCATCCTGCCGCTATCAATAAAGTGCAAGATAGACCAATCTCAATCTCGGTGGTCTATCCCGGACAGCAAATCTCAGAC
TACTGGATTCGAAATATCAAAGCGTTTGAAGCTCGTTTAGATAAGTTAGGTATTAAGTATGAGATTAATCAGGTGTTTAC
TCGACCGAATGTCGATGTACGACAGCAAAGCTTGTCACTGCTTGAAGCGATTCAGAATAATTCTGATTACCTCATTTTTA
CACTAGATACCACTCGCCATCGAAAATTTATCGAACACGTGATTAGCTCGACCGACACTAAACTTATTTTACAGAATATC
ACCACGCCAGTGCGCGCTTGGGATGATCATCACCCATTTATGTATGTCGGTTTTGATCATCAGCGAGGTACGCAAAAAAT
CGAGAGTTTCTACAAGCAAAAAACAGCGCAAGGCAGTAAATACTCGGTACTGTATTTTTCTGAAGGCTATATAAGCGATG
CGCGCGGCGATACTTTCATTGAGGAGATGAGTCACCACGATGGTTACAAGTTAAGTTCATCCTATTACACCAAAGCGACG
CGCGAGTCGGGTTTTAATGCCGCGATCAGTGCAATTGAAAAAGACCCAGAGATTTCTTTTATCTATGCGTGTTCAACCGA
TGTCGCACTGGGTGCCGTTGATGCTCTGAAACAGCTTAAACGAGGCGATATTTTGGTTAATGGCTGGGGGGGAGGCACTG
CTGAGTTAGAGGCGATTGAACAAGGTGATATTGATGTGACGGTGATGCGTATGAACGATGACACCGGCATAGCGATGGCG
GAGGCGATTAAGTGGGACTTAGAAGGTAAGCAGGTTCCACATGTTTATTCGGGTGATTTTGAAGTGGTAACGAGTGCCGA
CAGCGGTGAAAAAATCGATCGCTTGAAGCGTCGTGCATTTAGGTACTCAGACCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxP | Vibrio cholerae strain A1552 |
64.365 |
99.178 |
0.638 |