Detailed information NTG0186774

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VSVS12_RS13685
• Genome accession: NZ_CP016307
• Coordinates: 3038333..3039316 (-)
• Length: 327 a.a.
• NCBI ID: WP_065430959.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain VS-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3033333..3044316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS12_RS13660 (VSVS12_02771)	rimM	3033362..3033916 (-)	555	WP_005593970.1	ribosome maturation factor RimM	-
VSVS12_RS13665 (VSVS12_02772)	rpsP	3033941..3034189 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
VSVS12_RS13670 (VSVS12_02773)	ffh	3034401..3035780 (-)	1380	WP_005593966.1	signal recognition particle protein	-
VSVS12_RS13675 (VSVS12_02774)	-	3035963..3036757 (+)	795	WP_005593965.1	cytochrome C assembly family protein	-
VSVS12_RS13680 (VSVS12_02775)	-	3036886..3038160 (+)	1275	WP_065430958.1	HlyC/CorC family transporter	-
VSVS12_RS13685 (VSVS12_02776)	rpoS	3038333..3039316 (-)	984	WP_065430959.1	RNA polymerase sigma factor RpoS	Regulator
VSVS12_RS13690 (VSVS12_02777)	nlpD	3039394..3040314 (-)	921	WP_005598103.1	murein hydrolase activator NlpD	-
VSVS12_RS13695 (VSVS12_02778)	-	3040317..3040943 (-)	627	WP_009387609.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VSVS12_RS13700 (VSVS12_02779)	surE	3040947..3041690 (-)	744	WP_065431126.1	5'/3'-nucleotidase SurE	-
VSVS12_RS13705 (VSVS12_02780)	truD	3041717..3042799 (-)	1083	WP_065430960.1	tRNA pseudouridine(13) synthase TruD	-
VSVS12_RS13710 (VSVS12_02781)	ispF	3042871..3043350 (-)	480	WP_065430961.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VSVS12_RS13715 (VSVS12_02782)	ispD	3043354..3044076 (-)	723	WP_065430962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37381.46 Da
• Isoelectric Point: 4.7809

>NTDB_id=186774 VSVS12_RS13685 WP_065430959.1 3038333..3039316(-) (rpoS) [Vibrio scophthalmi strain VS-12]
MSMSNTATKVEEFDLNNMETLEVEAQTAKKSASANAAAKEEYEVSNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAIQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=186774 VSVS12_RS13685 WP_065430959.1 3038333..3039316(-) (rpoS) [Vibrio scophthalmi strain VS-12]
ATGAGTATGAGCAATACAGCAACAAAAGTTGAAGAATTTGATCTCAATAACATGGAAACGTTAGAGGTTGAAGCACAAAC
CGCAAAAAAATCCGCATCAGCTAATGCAGCTGCGAAAGAAGAGTATGAGGTCTCGAATAAGAGCCTTGATGCGACGCAGC
TTTACCTTGGCGAAATCGGCTTTTCACCACTACTTACCGCAGAAGAAGAAGTGCTTTATGCTCGCCGTGCCTTGCGTGGT
GATGAAGCAGCGCGTAAACGTATGATCGAAAGTAACCTGCGTTTGGTGGTGAAGATTTCTCGTCGTTACAGCAATCGTGG
TCTTGCACTGCTTGATTTGATTGAAGAAGGTAACTTAGGTCTGATCCGAGCGGTTGAAAAATTTGATCCAGAGCGTGGCT
TCCGTTTTTCAACGTATGCTACTTGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAACCAAACCCGCACAATTCGT
CTACCGATTCACGTCGTTAAAGAGCTGAATATTTATCTGCGTACCGCTCGCGAGCTTTCACAAAAGCTTGACCATGAGCC
AACGGCAGAAGAGATTGCAATTCAATTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTACGCCTGAATGAGCGTATTA
GTTCGGTTGATACCCCAATTGGTGGTGATGGCGAAAAAGCACTGTTGGACATTATTCCTGATGTGAAGCATTCAGATCCT
GAAGTATCAACACAAGATGATGATATTAAGGATTCATTGATTAATTGGCTTGATGAGTTAAACCCTAAGCAAAAAGAAGT
TTTAGCGCGCCGTTTTGGTCTGCTTGGGTATGAACCATCAACGCTTGAAGAAGTGGGACGCGAGATCAATCTAACACGTG
AGCGTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTACGTGAAATCTTGATTAAACAAGGTTTGAGCATGGAAAAC
CTGTTCAGCGTCGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.234	100	0.85