Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VSVS12_RS13500 Genome accession   NZ_CP016307
Coordinates   3004386..3004904 (-) Length   172 a.a.
NCBI ID   WP_065430945.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain VS-12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999386..3009904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS12_RS23230 (VSVS12_02733) - 2999685..3001448 (+) 1764 WP_065430939.1 hypothetical protein -
  VSVS12_RS13470 (VSVS12_02734) - 3001460..3001771 (+) 312 WP_065430940.1 DUF2523 family protein -
  VSVS12_RS13475 (VSVS12_02735) - 3001771..3002952 (+) 1182 WP_065430941.1 zonular occludens toxin domain-containing protein -
  VSVS12_RS13480 (VSVS12_02736) - 3003013..3003285 (-) 273 WP_065430942.1 hypothetical protein -
  VSVS12_RS13495 (VSVS12_02738) - 3003853..3004293 (+) 441 WP_418380866.1 RDD family protein -
  VSVS12_RS13500 (VSVS12_02739) luxS 3004386..3004904 (-) 519 WP_065430945.1 S-ribosylhomocysteine lyase Regulator
  VSVS12_RS13505 (VSVS12_02740) - 3004922..3005533 (-) 612 WP_065430946.1 hypothetical protein -
  VSVS12_RS13510 (VSVS12_02741) gshA 3005550..3007115 (-) 1566 WP_065430947.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18795.54 Da        Isoelectric Point: 4.7999

>NTDB_id=186768 VSVS12_RS13500 WP_065430945.1 3004386..3004904(-) (luxS) [Vibrio scophthalmi strain VS-12]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPGEQQVATAWLAAMADVLTVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIAAGISVNKNDDLA
LPAEMLNELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=186768 VSVS12_RS13500 WP_065430945.1 3004386..3004904(-) (luxS) [Vibrio scophthalmi strain VS-12]
ATGCCACTACTAGATAGCTTTACTGTCGATCATACCCGCATGCATGCACCGGCTGTGCGTGTTGCGAAAACCATGACAAC
GCCAAAAGGCGACACCATTACTGTGTTTGATTTGCGTTTTACTGCGCCAAACAAAGACATCTTGTCAGAGAAAGGGATTC
ATACCTTAGAGCACCTATACGCCGGCTTTATGCGTAATCACCTTAATGGTGATGCGGTAGAAATTATTGATATTTCACCA
ATGGGGTGTCGTACTGGTTTTTACATGAGCTTGATTGGTACGCCGGGTGAACAACAAGTTGCGACGGCATGGCTTGCTGC
AATGGCTGACGTGTTGACGGTTGAAAGCCAGAACAAAATCCCTGAGCTGAATGAATACCAGTGCGGTACTGCAGCGATGC
ACTCACTAGAAGAAGCGAAACAGATTGCGCAAGCAATTATCGCCGCGGGCATTTCAGTGAATAAGAATGACGATCTTGCT
CTACCGGCTGAAATGCTCAATGAGCTTCGCGTTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment