Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VSVS12_RS01860 Genome accession   NZ_CP016307
Coordinates   397196..398203 (+) Length   335 a.a.
NCBI ID   WP_065429686.1    Uniprot ID   A0A1B1NKF4
Organism   Vibrio scophthalmi strain VS-12     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 392196..403203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS12_RS01845 (VSVS12_00370) - 392649..393923 (-) 1275 WP_065429684.1 malic enzyme-like NAD(P)-binding protein -
  VSVS12_RS01850 (VSVS12_00371) rpmE 394170..394388 (-) 219 WP_005593644.1 50S ribosomal protein L31 -
  VSVS12_RS01855 (VSVS12_00372) priA 394707..396908 (+) 2202 WP_065429685.1 primosomal protein N' -
  VSVS12_RS01860 (VSVS12_00373) cytR 397196..398203 (+) 1008 WP_065429686.1 DNA-binding transcriptional regulator CytR Regulator
  VSVS12_RS01865 (VSVS12_00374) - 398429..398959 (+) 531 WP_065429687.1 SPOR domain-containing protein -
  VSVS12_RS01870 (VSVS12_00375) rfaH 399386..399925 (+) 540 WP_065429688.1 transcription/translation regulatory transformer protein RfaH -
  VSVS12_RS01875 (VSVS12_00376) wecB 400283..401410 (+) 1128 WP_065429689.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  VSVS12_RS01880 (VSVS12_00377) wecC 401424..402698 (+) 1275 WP_065429690.1 UDP-N-acetyl-D-mannosamine dehydrogenase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36993.61 Da        Isoelectric Point: 6.6392

>NTDB_id=186748 VSVS12_RS01860 WP_065429686.1 397196..398203(+) (cytR) [Vibrio scophthalmi strain VS-12]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEVVNYLTQLGHKRIAQISGPETATLCQFRQQGYQQALRRAGITMNPTYSTFGEFTFEAGAKAVRQLLALPEPPTA
IFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRKSAAPPRAL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=186748 VSVS12_RS01860 WP_065429686.1 397196..398203(+) (cytR) [Vibrio scophthalmi strain VS-12]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCGGGAGTTTCAACAGCGACAGTATCGAGGGCGCTGATGAATCCTGAAAA
AGTCTCTTCTGCCACGCGTAAGCGCGTTGAAGACGCTGTGTTAGAAGCTGGCTATTCCCCAAATTCTTTAGCGCGTAATT
TACGCCGCAACGAATCGAAAACGATCATCGCGATCATTCCTGATATCTGCGATCCTTATTACACGGAAATCATTCGTGGT
ATTGAAGATGCAGCTATGGAGCATGGTTATATTGTTCTGTTAGGCGATAGCGGTCAGCAGAAAAGACGTGAAAATTCCTT
TGTGAATTTGGTCTTTACTAAGCAAGCTGACGGCATGTTGCTACTTGGTACTGATCTGCCATTTGATGTCAGCAAACCTG
AGCAGAAAAACCTACCGCCAATGGTCATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTGCCAACGGTTCACATTGATAAC
CTGACCTCTGCGTTTGAAGTGGTCAACTATCTTACTCAGCTTGGTCATAAGCGCATCGCACAAATTTCCGGGCCAGAAAC
GGCGACTCTGTGTCAATTCCGTCAGCAAGGCTATCAACAAGCATTGCGCCGCGCGGGTATTACCATGAACCCGACTTACA
GCACATTTGGTGAGTTCACTTTTGAGGCGGGTGCCAAAGCGGTAAGACAATTACTCGCGCTGCCTGAGCCACCGACGGCG
ATTTTCTGTCATAACGATGCGATGGCGATTGGTGCGATCCAAGAAGCGAAACGTCTTGGTTTACGCGTACCACAAGATTT
ATCGGTAGTGGGCTTTGATGACATTCAGTTCGCTCAATATTGCGATCCACCGCTGACCACCATCTCACAGCCTCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTAGAGTTGCTGCGTGGCCATGATGTCCGTGCGGGGTCGCGTCTATTAGAA
ACGCAATTAGTGGTACGTAAGAGTGCTGCGCCACCAAGAGCTCTCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NKF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.578

99.104

0.937
  cytR Vibrio parahaemolyticus RIMD 2210633

90.09

99.403

0.896

Multiple sequence alignment