Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   A6J87_RS02365 Genome accession   NZ_CP020451
Coordinates   475420..477405 (-) Length   661 a.a.
NCBI ID   WP_049529417.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470420..482405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS02330 (A6J87_02315) - 470650..471501 (-) 852 Protein_456 ammonium transporter -
  A6J87_RS02335 (A6J87_02320) rsmI 471639..472505 (-) 867 WP_002890224.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  A6J87_RS02340 (A6J87_02325) yabA 472508..472828 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  A6J87_RS02345 (A6J87_02330) yaaT 472815..473621 (-) 807 WP_073950236.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  A6J87_RS02350 (A6J87_02335) - 473618..474493 (-) 876 WP_060972514.1 DNA polymerase III subunit delta' -
  A6J87_RS02355 (A6J87_02340) tmk 474502..475131 (-) 630 WP_060972515.1 dTMP kinase -
  A6J87_RS02365 (A6J87_02350) recP/tkt 475420..477405 (-) 1986 WP_049529417.1 transketolase Machinery gene
  A6J87_RS02370 (A6J87_02355) tpiA 477667..478425 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  A6J87_RS02375 (A6J87_02360) tuf 478680..479876 (-) 1197 WP_002890213.1 elongation factor Tu -
  A6J87_RS02380 (A6J87_02365) ftsW 480113..481393 (-) 1281 WP_080611521.1 cell division peptidoglycan polymerase FtsW -
  A6J87_RS02385 (A6J87_02370) - 481653..482069 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70892.53 Da        Isoelectric Point: 4.7618

>NTDB_id=186717 A6J87_RS02365 WP_049529417.1 475420..477405(-) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_259]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKVAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEANGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=186717 A6J87_RS02365 WP_049529417.1 475420..477405(-) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_259]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTCAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATCGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTCGAAGTTGGTATTAAATTCCGAGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGTTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GTGGTTCTGCAGACCTTTCAGCTTCTAACAATACAATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACCTGCCAGTAA
CTTATGTAATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACTGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGAGCTTACATCATCTCAGAAGCAAACGGTGATCTTGATGGTATCATCATTGCAACTGGTTCTGAAGTG
AAATTGGCTCTTGATACGCAGGCTGCTCTTGAAGCTGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAACCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-333)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563