Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A6J87_RS00470 Genome accession   NZ_CP020451
Coordinates   97466..99667 (-) Length   733 a.a.
NCBI ID   WP_080611404.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92466..104667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS00445 (A6J87_00445) - 93409..94170 (-) 762 WP_048674575.1 hypothetical protein -
  A6J87_RS00450 (A6J87_00450) nth 94298..94942 (-) 645 WP_013990728.1 endonuclease III -
  A6J87_RS00455 (A6J87_00455) - 94942..95640 (-) 699 WP_004182658.1 DnaD domain-containing protein -
  A6J87_RS00460 (A6J87_00460) metA 95712..96656 (-) 945 WP_013990730.1 homoserine O-succinyltransferase -
  A6J87_RS00465 (A6J87_00465) - 96829..97347 (-) 519 WP_002890753.1 adenine phosphoribosyltransferase -
  A6J87_RS00470 (A6J87_00470) recJ 97466..99667 (-) 2202 WP_080611404.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A6J87_RS00480 (A6J87_00475) - 100133..100537 (-) 405 WP_073950506.1 GNAT family N-acetyltransferase -
  A6J87_RS00485 (A6J87_00480) - 100572..100796 (-) 225 Protein_95 class I SAM-dependent methyltransferase -
  A6J87_RS00490 (A6J87_00485) - 100808..101575 (-) 768 WP_013990734.1 SDR family oxidoreductase -
  A6J87_RS00495 (A6J87_00490) rnz 101575..102504 (-) 930 WP_002884122.1 ribonuclease Z -
  A6J87_RS00500 (A6J87_00495) - 102536..103177 (-) 642 WP_037598872.1 cystathionine beta-lyase -
  A6J87_RS00505 (A6J87_00500) hflX 103170..104408 (-) 1239 WP_037598873.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82202.33 Da        Isoelectric Point: 4.3232

>NTDB_id=186701 A6J87_RS00470 WP_080611404.1 97466..99667(-) (recJ) [Streptococcus salivarius strain FDAARGOS_259]
MITSTYDWKINTKEPDAGFFKLAKERGLAETAAKIAYERGITTEDALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDTDYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQNIFDEAITMVDPDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGRLSEILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMSLPEGLPSVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKRVIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=186701 A6J87_RS00470 WP_080611404.1 97466..99667(-) (recJ) [Streptococcus salivarius strain FDAARGOS_259]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACGTGG
GTTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTACGACAGAAGATGCTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGAATGACGTCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGGGCTGAAGCTAGAGTCTATTTGCCTAACCGGTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATACCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGACTGCAAGAGTTACTCCGTATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTAGGATTTAAACTGGCCCCTCAACTCAATGCCTTGGGGCGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAAGAAGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATAACCATGGTAGACCCGGACAAACCTGTTCAGGTTCT
GGCCAAGGAAGGCTGGCATCCTGGCGTTCTAGGTATTGTGGCGGGGCGTATCATGGAACAAATCAGTCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCCGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCTGAAGAAAATCTTGGACGACT
ATCAGAGATTTTGTGTCATTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAGCTCAGTGAGCTTAGCTTGGATACCATCAAGAGCCTTGAAAAATTAGCACCTTTTGGTATGGACAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAACGGAGCCCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGATAGCTTTGATGTTGTCGCTTTTAACAAAGGTAATCTTCTTCAAGAATTCCAACAAGCTCAGGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTTCGATCAAAAAACATGTCACTGCCTGAAGGTCTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTTCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGTGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
TTGGGAACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.935

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

37.532

100

0.398

Multiple sequence alignment