Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A6J87_RS00415 Genome accession   NZ_CP020451
Coordinates   87885..89555 (-) Length   556 a.a.
NCBI ID   WP_073685429.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82885..94555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS00380 (A6J87_00380) - 82922..83614 (-) 693 WP_000240128.1 phosphoglycerate mutase -
  A6J87_RS00385 (A6J87_00385) - 83870..84805 (+) 936 WP_080611402.1 dihydroorotate oxidase -
  A6J87_RS00390 (A6J87_00390) - 84868..85068 (-) 201 WP_060972368.1 hypothetical protein -
  A6J87_RS00395 (A6J87_00395) - 85128..85403 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  A6J87_RS00400 (A6J87_00400) - 85540..86112 (-) 573 WP_073685435.1 YpmS family protein -
  A6J87_RS00405 (A6J87_00405) - 86105..86980 (-) 876 WP_073685433.1 SGNH/GDSL hydrolase family protein -
  A6J87_RS00410 (A6J87_00410) - 86973..87815 (-) 843 WP_073685431.1 DegV family protein -
  A6J87_RS00415 (A6J87_00415) recN 87885..89555 (-) 1671 WP_073685429.1 DNA repair protein RecN Machinery gene
  A6J87_RS00420 (A6J87_00420) - 89564..90010 (-) 447 WP_004182652.1 arginine repressor -
  A6J87_RS00425 (A6J87_00425) - 89997..90824 (-) 828 WP_080611403.1 TlyA family RNA methyltransferase -
  A6J87_RS00430 (A6J87_00430) - 90817..91689 (-) 873 WP_048674581.1 polyprenyl synthetase family protein -
  A6J87_RS00435 (A6J87_00435) - 91689..91904 (-) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  A6J87_RS00440 (A6J87_00440) xseA 91894..93222 (-) 1329 WP_064524648.1 exodeoxyribonuclease VII large subunit -
  A6J87_RS00445 (A6J87_00445) - 93409..94170 (-) 762 WP_048674575.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62469.69 Da        Isoelectric Point: 4.6660

>NTDB_id=186700 A6J87_RS00415 WP_073685429.1 87885..89555(-) (recN) [Streptococcus salivarius strain FDAARGOS_259]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKKFFQTKKE
YQEYFDRYRELRKSVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMQERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKLLEKDLLASAETLQRARHQIAKALESEIKTELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGESFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTQAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=186700 A6J87_RS00415 WP_073685429.1 87885..89555(-) (recN) [Streptococcus salivarius strain FDAARGOS_259]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTA
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATTCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTCCATATTACCATGCTTGATGCCTTCGGTGACAAGAAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAATCCGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGTTGGCATTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCAGATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTCCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTACAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGAAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCTACTTGAAAAAGACTTACTAGCGTCTGCAGAGACCTTGCAAAGGGCACGACATCAGATTGCAA
AGGCTCTTGAATCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTACATTTCAACCAATCCAGGTGAAAGCTTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCCCGAAAAGAAGATAAAACTA
GTATTGTCTTTGACGAAGTTGATACTGGAGTGTCAGGCCGCGTAGCCCAGGCTATCGCACAGAAGATTCATAAGATTGGA
AGCCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCCCGTGTTCGTCTCTTAACACCTGAGGAAAGGGTTCAAGAAATTGCTAAGATGTTGG
CAGGTGACAATGTGACACAAGCTGCCTTGAGCCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.19

100

0.451

Multiple sequence alignment