Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   A6J85_RS05615 Genome accession   NZ_CP020450
Coordinates   1111657..1112574 (+) Length   305 a.a.
NCBI ID   WP_082307386.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106657..1117574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS05595 (A6J85_05530) scaA 1106957..1107889 (-) 933 WP_082307384.1 metal ABC transporter substrate-binding lipoprotein/adhesin ScaA -
  A6J85_RS05600 (A6J85_05535) - 1107911..1108747 (-) 837 WP_045504337.1 metal ABC transporter permease -
  A6J85_RS05605 (A6J85_05540) - 1108749..1109468 (-) 720 WP_012130835.1 metal ABC transporter ATP-binding protein -
  A6J85_RS05610 (A6J85_05545) - 1109616..1111508 (+) 1893 WP_082307385.1 M13-type metalloendopeptidase -
  A6J85_RS05615 (A6J85_05550) comR 1111657..1112574 (+) 918 WP_082307386.1 XRE family transcriptional regulator Regulator
  A6J85_RS05620 (A6J85_05555) - 1112718..1113647 (+) 930 WP_105165115.1 ABC transporter ATP-binding protein -
  A6J85_RS05625 (A6J85_05560) - 1113640..1114518 (+) 879 WP_082307387.1 ABC transporter permease -
  A6J85_RS05630 (A6J85_05565) - 1114593..1115291 (-) 699 WP_185758148.1 ion transporter -
  A6J85_RS05635 (A6J85_05570) - 1115587..1116150 (-) 564 WP_048777655.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36161.35 Da        Isoelectric Point: 4.3738

>NTDB_id=186644 A6J85_RS05615 WP_082307386.1 1111657..1112574(+) (comR) [Streptococcus gordonii strain FDAARGOS_257]
MEFKEELGQKIQSLREEKGLSRLAICGEEDILTTRQLQRIEKGQSLPTIATALYIAEQLEVSLDTLANRERLELPSGYFE
LKYRLEKLYHYGDGERLQQREELIEEIYRKYFDQLPEEEQLYLQIKQAKNDMVLTENIAYDQGLIDEYLDQALAKEKLTE
MDLEIIDLRLLALGLKDFDKKEFTCLLNKLLEAVADYPTNGLEKIQARIIFAAGVLSHYQEYDRLPEILRVLEELMLRRN
DFQDRVFSYALQWKIALFLENNLEKAEDNYQKVKLMLELLPEDVLKENMRLDWEQDISRYSKIDE

Nucleotide


Download         Length: 918 bp        

>NTDB_id=186644 A6J85_RS05615 WP_082307386.1 1111657..1112574(+) (comR) [Streptococcus gordonii strain FDAARGOS_257]
GTGGAATTTAAGGAAGAGCTAGGACAGAAAATTCAATCTCTAAGAGAAGAAAAAGGCTTGAGTCGTCTGGCGATTTGTGG
GGAAGAAGACATTTTGACAACGCGGCAACTACAGCGAATTGAAAAAGGCCAGTCTCTGCCTACCATCGCGACAGCTCTCT
ATATTGCTGAGCAACTGGAAGTATCACTGGATACACTAGCAAATAGAGAGCGATTAGAGTTACCGTCTGGCTATTTTGAA
TTGAAGTATCGCTTGGAAAAGCTATATCACTATGGCGATGGAGAACGTCTTCAACAGAGAGAAGAGCTGATCGAGGAAAT
CTATCGGAAGTATTTCGATCAGCTCCCTGAGGAAGAACAACTTTATCTTCAGATTAAGCAGGCCAAGAACGATATGGTTT
TAACGGAAAATATTGCCTATGATCAAGGCTTAATAGATGAATATCTGGATCAGGCTTTGGCCAAAGAAAAGTTGACGGAA
ATGGATCTAGAAATCATTGATTTACGCCTGTTGGCGCTTGGTTTGAAAGATTTTGACAAGAAGGAGTTTACTTGTTTGCT
AAACAAGTTACTTGAGGCGGTAGCTGATTATCCGACCAATGGATTGGAAAAAATTCAGGCCAGAATCATTTTTGCGGCGG
GGGTCTTGTCTCACTATCAAGAATATGACCGACTACCCGAAATATTAAGAGTCCTAGAAGAGCTGATGTTGAGGAGAAAC
GACTTTCAAGATCGTGTCTTTAGCTATGCGCTTCAGTGGAAAATCGCCCTCTTCTTGGAAAATAATCTCGAAAAAGCTGA
GGACAACTATCAAAAGGTAAAGTTAATGCTAGAGCTATTGCCAGAAGATGTCCTTAAGGAGAATATGAGACTGGACTGGG
AGCAGGATATAAGCCGCTATAGTAAAATTGATGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(11-66)

ComR tetratricopeptide (ComR_TPR)

(75-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.71

97.377

0.367

Multiple sequence alignment