Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A6J85_RS03710 Genome accession   NZ_CP020450
Coordinates   753694..754476 (-) Length   260 a.a.
NCBI ID   WP_045772603.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 748694..759476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS03695 (A6J85_03655) purC 751599..752306 (-) 708 WP_061596354.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  A6J85_RS03700 (A6J85_03660) - 752460..752699 (-) 240 WP_008808067.1 acyl carrier protein -
  A6J85_RS03705 (A6J85_03665) plsX 752696..753697 (-) 1002 WP_045772604.1 phosphate acyltransferase PlsX -
  A6J85_RS03710 (A6J85_03670) recO 753694..754476 (-) 783 WP_045772603.1 DNA repair protein RecO Machinery gene
  A6J85_RS03715 (A6J85_03675) - 754454..755641 (-) 1188 WP_061596356.1 pyridoxal phosphate-dependent aminotransferase -
  A6J85_RS03720 (A6J85_03680) - 755766..756056 (-) 291 WP_011999582.1 Veg family protein -
  A6J85_RS03725 (A6J85_03685) dnaB 756058..757413 (-) 1356 WP_008808062.1 replicative DNA helicase -
  A6J85_RS03730 (A6J85_03690) rplI 757440..757892 (-) 453 WP_011999581.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29978.29 Da        Isoelectric Point: 5.1557

>NTDB_id=186606 A6J85_RS03710 WP_045772603.1 753694..754476(-) (recO) [Streptococcus gordonii strain FDAARGOS_257]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFSGVLCPDHYHEDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=186606 A6J85_RS03710 WP_045772603.1 753694..754476(-) (recO) [Streptococcus gordonii strain FDAARGOS_257]
ATGATGCAGTCCATCACGAGTAAGGCGCTAGTACTCTATAATCGAAACTTTCGTGAAGATGACAAATTAGTAAAAATATT
TACAGAACAGGCTGGCAAGCGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATCTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAAGATTACCAAGATGTCCAGCCTTTCACT
CGGATTAATAGTGATTTGTTCATCATGGCCTATGCGACCTATGTCGCTGCCTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGATGCTGCTCTTTTTGCCTTTCTGACAAAAACCTTGGAGCTAATGGAAGAAGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCACGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAGTGGTGTCCTTTGTCCTGATCACTATCATGAGGACGATCGTCGCTGTCATCT
CCATCCCAATATCCCATTCTTACTTGATCAATTTCAGGCAGTAGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAACAACAACTACGCGAATTTATAGATCAAATTTACGACGATTATGTTGGAATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTAGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(2-79)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

98.077

0.731