Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AOT16_RS10255 | Genome accession | NZ_CP016295 |
| Coordinates | 2146594..2146974 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CMC-CR-MDR-Ab4 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2141594..2151974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT16_RS10225 (AOT16_10085) | tadA | 2141712..2142215 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| AOT16_RS10230 (AOT16_10090) | - | 2142222..2143346 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AOT16_RS10235 (AOT16_10095) | ung | 2143343..2144056 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AOT16_RS10240 (AOT16_10100) | - | 2144107..2144703 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AOT16_RS10245 (AOT16_10105) | gspK | 2144934..2145893 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| AOT16_RS10250 (AOT16_10110) | xcpW | 2145893..2146594 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AOT16_RS10255 (AOT16_10115) | xcpV | 2146594..2146974 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AOT16_RS10260 (AOT16_10120) | - | 2146964..2147518 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AOT16_RS10265 (AOT16_10125) | - | 2147528..2148136 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AOT16_RS10270 (AOT16_10130) | - | 2148174..2148947 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AOT16_RS10275 (AOT16_10135) | - | 2148965..2149306 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AOT16_RS10280 (AOT16_10140) | - | 2149318..2150298 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| AOT16_RS10285 (AOT16_10145) | kdsB | 2150310..2151071 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=186596 AOT16_RS10255 WP_000836911.1 2146594..2146974(-) (xcpV) [Acinetobacter baumannii strain CMC-CR-MDR-Ab4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=186596 AOT16_RS10255 WP_000836911.1 2146594..2146974(-) (xcpV) [Acinetobacter baumannii strain CMC-CR-MDR-Ab4]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |