Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A6J85_RS00280 Genome accession   NZ_CP020450
Coordinates   54669..56327 (-) Length   552 a.a.
NCBI ID   WP_008809082.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49669..61327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS00250 (A6J85_00250) - 50571..50786 (-) 216 WP_045634687.1 YozE family protein -
  A6J85_RS00255 (A6J85_00255) - 50896..51588 (-) 693 WP_008809077.1 phosphoglycerate mutase -
  A6J85_RS00260 (A6J85_00260) perR 51750..52220 (-) 471 WP_082307102.1 peroxide-responsive transcriptional repressor PerR -
  A6J85_RS00265 (A6J85_00265) - 52586..52861 (-) 276 WP_008809079.1 HU family DNA-binding protein -
  A6J85_RS00270 (A6J85_00270) - 53006..53839 (-) 834 WP_061596591.1 DegV family protein -
  A6J85_RS00275 (A6J85_00275) - 53903..54631 (-) 729 WP_008809081.1 metallophosphoesterase -
  A6J85_RS00280 (A6J85_00280) recN 54669..56327 (-) 1659 WP_008809082.1 DNA repair protein RecN Machinery gene
  A6J85_RS00285 (A6J85_00285) - 56335..56766 (-) 432 WP_008809083.1 arginine repressor -
  A6J85_RS00290 (A6J85_00290) - 56759..57574 (-) 816 WP_061600166.1 TlyA family RNA methyltransferase -
  A6J85_RS00295 (A6J85_00295) - 57567..58442 (-) 876 WP_008809085.1 polyprenyl synthetase family protein -
  A6J85_RS00300 (A6J85_00300) - 58439..58651 (-) 213 WP_008809086.1 exodeoxyribonuclease VII small subunit -
  A6J85_RS00305 (A6J85_00305) xseA 58629..59969 (-) 1341 WP_082307103.1 exodeoxyribonuclease VII large subunit -
  A6J85_RS00315 (A6J85_00315) - 60125..60967 (-) 843 WP_105165070.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62314.36 Da        Isoelectric Point: 4.5992

>NTDB_id=186583 A6J85_RS00280 WP_008809082.1 54669..56327(-) (recN) [Streptococcus gordonii strain FDAARGOS_257]
MLLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGATKAEIEGLFSLENSSAIEAIF
EEQGLELTDELIIRREILQNGRSVSRVNGQLVNLSVLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAF
YQETFDHYRQLRKQVLTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLNHKLIADTLTNAYAMLDNED
FSSLANVRSAMNDMESIEEYDPTYKELSSSLSETYYVLEDVTKRLEDILDGLDFDGNRLMQVESRLDLINSITRKYGGQV
DDVLEYFSQISKEYQLLTGSHSSSEDLEAELKELEKRLVNLAGQLSQARHTLAKQLESEIKQELQDLYMEKANFQVQFNK
SKFNREGNEQVEFYISTNPGENFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADNQFFIEKISDENSTVSTVRLLDFDERVEEIAKMLAGENVTEAALSQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=186583 A6J85_RS00280 WP_008809082.1 54669..56327(-) (recN) [Streptococcus gordonii strain FDAARGOS_257]
ATGTTATTAGAAATTTCTATAAAAAACTTTGCTATTATTGAAGAAATCTCTCTTCATTTTGACCAAGGGATGACAGTCCT
GACCGGAGAAACTGGGGCAGGAAAGTCTATCATTATCGATGCTATGAATATGATGCTTGGTAGCCGTGCTACTACAGATG
TTATTCGTCATGGAGCTACTAAGGCAGAAATTGAAGGATTGTTTTCATTGGAGAATAGCTCAGCTATAGAAGCAATTTTT
GAAGAGCAGGGCTTGGAATTGACTGATGAGCTTATTATCCGCCGAGAAATTCTGCAAAATGGCCGTAGCGTCAGCCGGGT
TAATGGACAGTTAGTTAATCTATCAGTTTTGAAGGCTATTGGTCAACATTTAGTAGATATTCATGGTCAACACGATCAGG
AAGAATTAATGCGCCCTCAGCTTCATATAGCCATGCTGGACGAGTTTGGAGATGAGGATTTCGTTGCCTTGAAAGCTTTC
TATCAAGAAACCTTTGATCACTATCGTCAGCTTCGCAAACAGGTTCTGACCTTGCATAAAAATCAAGAGGAGCATAAGGC
TCGCATTGAAATGCTAGAATTTCAGATGGCTGAAATTGATAGTGCTTCCTTGAAAACTGGTGAAGACAAAGCTCTCCACC
AAGAACGTGATCGCTTACTCAATCACAAGCTGATTGCTGATACCTTGACCAATGCATACGCTATGTTGGATAATGAGGAT
TTTTCTAGTTTGGCTAATGTGCGTTCAGCTATGAACGATATGGAGTCTATTGAAGAATATGACCCAACATACAAGGAATT
ATCTTCTAGTCTTTCTGAGACCTATTACGTTCTGGAAGATGTGACTAAACGGTTGGAAGACATTTTAGATGGACTGGATT
TTGATGGCAACCGCCTGATGCAGGTTGAAAGTCGTTTAGATTTAATTAACAGTATCACTCGAAAATATGGTGGCCAAGTA
GATGATGTTCTAGAATATTTTTCGCAAATTTCGAAAGAGTACCAGCTACTGACAGGTAGTCATTCATCTTCTGAAGATTT
AGAGGCAGAACTTAAAGAGTTAGAAAAGCGGTTGGTGAATTTGGCTGGACAGCTTAGCCAAGCAAGGCATACTTTAGCTA
AACAACTTGAGTCGGAAATTAAGCAGGAACTGCAAGATCTCTATATGGAAAAAGCGAATTTTCAAGTTCAATTTAACAAG
AGCAAGTTTAACCGTGAAGGAAATGAGCAAGTTGAGTTTTATATTTCAACTAATCCTGGAGAAAACTTTAAGCCTTTAGT
TAAGGTTGCATCAGGTGGGGAATTATCTCGTCTAATGCTTGCAATTAAATCAGCTTTCTCTCGGAAAGAAGGAAAGACTA
GTATAGTCTTTGACGAAGTTGATACAGGAGTTTCGGGTCGTGTAGCCCAAGCTATTGCACAAAAAATCCATAAGATTGGC
AGTAATGGTCAGGTTTTAGCAATCTCTCATCTGCCACAAGTCATTGCCATTGCAGACAACCAATTCTTTATTGAAAAAAT
TTCTGATGAAAATTCTACTGTTTCAACTGTTCGTCTCTTGGACTTCGATGAGCGAGTGGAAGAAATTGCTAAGATGTTAG
CTGGTGAAAATGTAACAGAAGCCGCTTTGAGCCAGGCGCGTGAATTATTAAAGAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.473

Multiple sequence alignment