Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   A6J82_RS08425 Genome accession   NZ_CP020449
Coordinates   1615189..1618422 (-) Length   1077 a.a.
NCBI ID   WP_000772305.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610189..1623422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS08415 (A6J82_08425) - 1610646..1611563 (-) 918 WP_000634649.1 magnesium transporter CorA family protein -
  A6J82_RS08420 (A6J82_08430) rexA 1611576..1615199 (-) 3624 WP_000143239.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  A6J82_RS08425 (A6J82_08435) rexB 1615189..1618422 (-) 3234 WP_000772305.1 ATP-dependent nuclease subunit B Machinery gene
  A6J82_RS08430 (A6J82_08440) - 1618600..1619502 (+) 903 WP_000686768.1 neutral zinc metallopeptidase -
  A6J82_RS08435 (A6J82_08445) - 1619639..1621051 (+) 1413 WP_017771557.1 IS1182 family transposase -
  A6J82_RS08440 (A6J82_08450) ltrA 1621101..1622378 (-) 1278 WP_094248899.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 123954.65 Da        Isoelectric Point: 5.2243

>NTDB_id=186550 A6J82_RS08425 WP_000772305.1 1615189..1618422(-) (rexB) [Streptococcus agalactiae strain FDAARGOS_254]
MKLLYTDINHDMTEILVNQAAHAAEAGWRIFYIAPNSLSFEKERAVLETLPQEASFAITITRFAQLARYFTLNQPNQKES
LNDIGLAMIFYRALASFEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYLHSPEKFEDLLAIFLVVSDLLRE
GEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSLSSRCQEIIIGAYASQKAYKTNFTNGNIYSAG
VDFLRYLATTFQTKPEFILSKWESKSGFEMISKNIEGKHDFTNSSHILDDTAKDCITIWECINQKDEVEHVARAIRQKLY
QGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQ
DDLDYFEAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQFMFFLTQVGLSDNLS
RLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQF
VYALGMTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQM
SPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPII
TDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIE
SFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIKINGIIDRID
RLSDGSLGVVDYKSSAQKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPPIFGAMYLHMQEPRQDLSKIKNLDDLVTKNH
QALTYKGLFSEAEKEFLANGKYHLKDSLYSEAEIAILQAHNQSLYKKASETIKSGKFLINPYTEDAKTVDGDQFKSITGF
EADRHMARARALYKLPAKEKRQGFLTLMQQEEENDDL

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=186550 A6J82_RS08425 WP_000772305.1 1615189..1618422(-) (rexB) [Streptococcus agalactiae strain FDAARGOS_254]
ATGAAATTACTTTATACTGATATTAATCATGATATGACAGAAATCTTAGTCAATCAGGCCGCGCATGCTGCTGAAGCTGG
ATGGCGTATTTTTTATATTGCTCCAAACTCTTTATCTTTTGAAAAGGAGCGTGCAGTATTAGAGACCCTTCCTCAAGAAG
CCTCTTTTGCTATTACAATTACTCGCTTTGCTCAATTGGCACGTTATTTTACTTTAAACCAGCCTAATCAAAAAGAAAGT
TTAAACGATATTGGATTAGCAATGATCTTTTATCGTGCTTTAGCAAGTTTTGAAGATGGACAATTAAAAGTTTTTGGACG
ATTGAAGCAAGATGCTTCCTTTATCAGTCAATTGGTAGACCTATACAAAGAATTGCAGACAGCAAATCTGAGTATTTTAG
ATTTAAAATATTTACATTCTCCTGAAAAATTTGAAGATCTATTAGCTATTTTTCTAGTGGTTTCAGATCTTTTAAGAGAA
GGAGAATACGACAATCAATCTAAAATTGCCTTTTTTACAGAACAAGTAAGGTCAGGACAGCTAGATGTGGATTTAAAGAA
CACTATCCTTATAGTCGATGGTTTTACCCGTTTCTCAGCTGAAGAAGAAGCTTTAATTAAAAGTCTGAGTTCACGTTGTC
AAGAGATTATCATCGGAGCTTATGCTAGCCAAAAAGCGTATAAGACTAACTTTACCAATGGAAATATTTATTCTGCAGGG
GTTGATTTTTTAAGATATCTAGCAACGACATTTCAAACAAAACCAGAATTTATCTTGTCTAAGTGGGAAAGTAAGTCTGG
TTTTGAAATGATTTCGAAAAATATCGAAGGTAAACATGATTTTACAAATAGTAGTCACATTTTAGACGACACTGCTAAAG
ATTGTATAACAATTTGGGAGTGCATTAATCAAAAAGATGAAGTGGAACATGTGGCTAGAGCTATACGTCAGAAACTTTAT
CAGGGATATCGCTACAAAGATATTTTAGTTTTACTAGGAGATGTAGATAGTTATAAACTACAATTAAGTAAGATTTTTGA
ACAGTATGATATTCCTTATTATTTCGGTAAAGCTGAAACAATGGCTGCGCACCCTTTAGTTCATTTTATGGATTCCTTGT
CGCGAATAAAACGTTATCGATTTAGAGCTGAAGATGTTTTAAATCTTTTTAAGACAGGTATTTATGGAGAGATTGGTCAA
GATGATTTAGATTATTTTGAAGCTTATATCTCATATGCAGATATTAAAGGTCCTAAGAAGTTCTTTACAGATTTTGTTGT
GGGGGCTAAAAAATTTGATTTAGGGCGTCTTAACACTATTCGTCAGTCCCTCCTTACTCCACTGGAAAGTTTTGTTAAAA
CGAAAAAACAAGACGGTATAAAAACACTCAACCAATTCATGTTTTTCCTTACTCAGGTAGGTTTGAGTGACAATTTATCG
CGATTAGTTGGTCAAATGTCTGAAAATGAACAAGAAAAACATCAAGAAGTTTGGAAAACATTTACAGATATTTTAGAGCA
GTTTCAAACAATATTTGGTCAAGAAAAATTAAATTTAGACGAATTTTTATCGTTATTAAATTCAGGTATGATGCAAGCCG
AGTATCGTATGGTCCCTGCTACTGTTGATGTGGTTACTGTTAAGTCTTACGACTTGGTAGAACCACATAGTAATCAATTT
GTCTATGCCCTAGGCATGACACAATCACATTTTCCAAAGATTGCTCAAAACAAATCTTTAATATCTGATATTGAACGTCA
GCTTATAAATGATGCCAATGACACTGATGGTCATTTTGACATTATGACGCGAGAAAATTTGAAGAAAAACCATTTTGCTG
CTCTCTCTCTTTTTAATGCTGCTAAACAAGCATTAGTGTTGACTATACCACAATTATTGAATGAGTCTGAAGATCAGATG
TCACCATATCTTGTCGAACTAAGAGATATAGGTGTTCCTTTTAATCATAAAGGACGCCAATCGTTAAAAGAAGAAGCTGA
TAATATTGGGAATTACAAAGCTTTATTATCGCGTGTTGTTGACTTGTATCGCTCTGCTATTGACAAAGAGATGACTAAAG
AAGAACAAACTTTTTGGTCAGTTGCTGTTCGTTATTTGCGTCGTCAATTAACTTCTAAAGGGATCGAGATACCAATAATT
ACAGATAGTCTTGATACTGTGACAGTTTCATCAGATGTGATGACCAGACGCTTCCCAGAAGATCACCCACTTAAATTATC
CTCATCTGCTTTGACAACTTTTTATAATAATCAATATAAGTATTTTTTACAATATGTGTTAGGTTTGGAAGAACAAGACT
CAATTCATCCAGATATGCGGCACCACGGAACGTATCTTCATCGTGTTTTTGAAATTCTGATGAAAAACCAAGGGATAGAA
TCTTTTGAAGAGAAACTCAACTCTGCAATTAATAAAACCAATCAAGAAGATGTTTTCAAATCCTTGTATTCAGAAGATGC
AGAAAGTCGTTATTCTTTAGAAATTTTAGAAGATATCGCGCGTGCAACTGCAACCATATTACGACAAGATAGTCAGATGA
CTGTTGAAAGTGAAGAAGAACGATTTGAACTAATGATTGATAATACTATAAAAATTAACGGTATTATTGACCGTATCGAT
CGTTTATCTGATGGTTCTTTGGGTGTCGTGGACTATAAATCAAGCGCTCAAAAATTCGATATCCAAAAATTTTATAACGG
TCTAAGTCCACAATTAGTCACCTACATTGATGCTATCAGTCGTGACAAGGAAGTTGAACAAAAACCACCGATTTTTGGAG
CTATGTACTTACATATGCAAGAACCTAGACAAGACTTGTCTAAAATTAAAAATTTAGATGATTTAGTAACAAAAAATCAT
CAAGCTTTAACTTATAAAGGATTATTTTCAGAAGCCGAAAAAGAATTCTTAGCAAATGGGAAATACCATCTCAAAGATTC
CCTTTATTCAGAGGCTGAAATTGCTATTTTACAAGCACATAATCAATCGCTTTACAAAAAAGCATCTGAGACTATTAAGT
CAGGTAAGTTTTTGATCAATCCATATACAGAAGATGCTAAAACAGTTGACGGTGATCAGTTTAAGAGTATTACGGGGTTC
GAGGCGGATAGGCATATGGCACGTGCCAGAGCGCTTTATAAATTACCTGCTAAGGAAAAACGTCAAGGTTTCTTAACATT
AATGCAGCAAGAGGAGGAAAATGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.03

99.907

0.43

Multiple sequence alignment