Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   A6J82_RS06390 Genome accession   NZ_CP020449
Coordinates   1192964..1193404 (+) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187964..1198404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS06370 (A6J82_06390) - 1188080..1188589 (-) 510 WP_000870955.1 HdeD family acid-resistance protein -
  A6J82_RS06375 (A6J82_06395) gdhA 1188757..1190106 (+) 1350 WP_000200441.1 NADP-specific glutamate dehydrogenase -
  A6J82_RS06380 (A6J82_06400) - 1190176..1190586 (+) 411 WP_000594934.1 peptide deformylase -
  A6J82_RS06385 (A6J82_06405) - 1190623..1192695 (-) 2073 WP_000726912.1 bifunctional metallophosphatase/5'-nucleotidase -
  A6J82_RS06390 (A6J82_06410) rcrR 1192964..1193404 (+) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  A6J82_RS06395 (A6J82_06415) rcrP 1193451..1195268 (+) 1818 WP_000481823.1 ABC transporter ATP-binding protein Regulator
  A6J82_RS06400 (A6J82_06420) rcrQ 1195258..1197012 (+) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  A6J82_RS06405 (A6J82_06425) - 1197120..1197746 (+) 627 WP_000449636.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=186531 A6J82_RS06390 WP_000431168.1 1192964..1193404(+) (rcrR) [Streptococcus agalactiae strain FDAARGOS_254]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=186531 A6J82_RS06390 WP_000431168.1 1192964..1193404(+) (rcrR) [Streptococcus agalactiae strain FDAARGOS_254]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411