Detailed information NTG0186502

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: A6J82_RS02240
• Genome accession: NZ_CP020449
• Coordinates: 385216..386325 (-)
• Length: 369 a.a.
• NCBI ID: WP_000264865.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain FDAARGOS_254
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 380216..391325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J82_RS02225 (A6J82_02255)	-	380917..381783 (+)	867	WP_000398683.1	GRP family sugar transporter	-
A6J82_RS02230 (A6J82_02260)	ltrA	382367..383644 (+)	1278	WP_001292556.1	group II intron reverse transcriptase/maturase	-
A6J82_RS02235 (A6J82_02265)	-	383694..385106 (-)	1413	WP_017771557.1	IS1182 family transposase	-
A6J82_RS02240 (A6J82_02270)	recF	385216..386325 (-)	1110	WP_000264865.1	DNA replication/repair protein RecF	Machinery gene
A6J82_RS02245 (A6J82_02275)	yaaA	386328..386681 (-)	354	WP_000384868.1	S4 domain-containing protein YaaA	-
A6J82_RS02250 (A6J82_02280)	yfmF	386920..388164 (+)	1245	WP_000706187.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
A6J82_RS02255 (A6J82_02285)	yfmH	388166..389449 (+)	1284	WP_000217756.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
A6J82_RS02260 (A6J82_02290)	pgsA	389572..390114 (+)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
A6J82_RS02265 (A6J82_02295)	-	390114..390953 (+)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42512.33 Da
• Isoelectric Point: 7.3132

>NTDB_id=186502 A6J82_RS02240 WP_000264865.1 385216..386325(-) (recF) [Streptococcus agalactiae strain FDAARGOS_254]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=186502 A6J82_RS02240 WP_000264865.1 385216..386325(-) (recF) [Streptococcus agalactiae strain FDAARGOS_254]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.361	98.374	0.623
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447