Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BA022_RS13545 Genome accession   NZ_CP016278
Coordinates   2895546..2897123 (-) Length   525 a.a.
NCBI ID   WP_088887806.1    Uniprot ID   -
Organism   Diaphorobacter nitroreducens strain SL-205     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2890546..2902123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA022_RS13520 (BA022_13190) - 2890707..2891534 (-) 828 WP_088887803.1 YecA family protein -
  BA022_RS13525 (BA022_13195) - 2892017..2893318 (-) 1302 WP_088887804.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BA022_RS13530 (BA022_13200) - 2893306..2893791 (-) 486 WP_088887805.1 putative toxin-antitoxin system toxin component, PIN family -
  BA022_RS13535 (BA022_13205) - 2893781..2895102 (-) 1322 Protein_2688 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  BA022_RS13540 (BA022_13210) - 2895099..2895542 (-) 444 WP_012655408.1 acyl-CoA thioesterase -
  BA022_RS13545 (BA022_13215) rpoN/rpoN1 2895546..2897123 (-) 1578 WP_088887806.1 RNA polymerase factor sigma-54 Machinery gene
  BA022_RS13550 (BA022_13220) lptB 2897176..2897928 (-) 753 WP_088888621.1 LPS export ABC transporter ATP-binding protein -
  BA022_RS13555 (BA022_13225) lptA 2897952..2898611 (-) 660 WP_088887807.1 lipopolysaccharide transport periplasmic protein LptA -
  BA022_RS13560 (BA022_13230) - 2898785..2899435 (-) 651 WP_088887808.1 thiol:disulfide interchange protein DsbA/DsbL -
  BA022_RS13565 (BA022_13235) - 2899494..2900120 (-) 627 WP_047349343.1 SPOR domain-containing protein -
  BA022_RS13570 (BA022_13240) argS 2900133..2901836 (-) 1704 WP_088887809.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 57477.59 Da        Isoelectric Point: 4.5796

>NTDB_id=186502 BA022_RS13545 WP_088887806.1 2895546..2897123(-) (rpoN/rpoN1) [Diaphorobacter nitroreducens strain SL-205]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTLEEAPREEFGLAQADAPVSEQDREAEDAIY
SGAVSAGQESATSQNDAETSTAESTAEPADWEGDGSVDLAPDDSEWGGDAPARNGAGAGSDDEVDATELARSQESLTAFL
HRQALALRLSELDMAALRFLIESLNDDGYLDESLQDLAASLAGTEEPEQLDELVHRFTVALRLLQSLEPAGVGARGLAEC
LTLQLRAMDQDEEGDPDVIQAALAICGQPLDLLAKRDVRRLAQACGTSEERTRAAMVLIARLEPRPGRRFADVDRNIIVP
DVIVKKTGRGGQQNFSVQLNPDVMPRLRVHDIYAGALRGGRGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQ
KNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFIAAE
NPHKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=186502 BA022_RS13545 WP_088887806.1 2895546..2897123(-) (rpoN/rpoN1) [Diaphorobacter nitroreducens strain SL-205]
ATGAAGCCCGGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACACCGCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAAATGCTCGACGAGAACCCCTTCCTGGAGCGCACGCTGGAAGAGG
CCCCGCGCGAGGAGTTCGGCCTGGCCCAGGCCGATGCACCGGTGAGCGAGCAAGACCGCGAAGCCGAGGATGCTATTTAT
TCAGGAGCTGTCAGCGCAGGACAGGAAAGCGCTACAAGCCAAAATGATGCAGAAACCTCCACCGCCGAATCCACGGCCGA
ACCCGCGGACTGGGAAGGCGACGGCTCGGTAGACCTGGCGCCCGACGACAGCGAGTGGGGCGGCGACGCCCCGGCGCGCA
ACGGTGCCGGCGCGGGGAGCGACGACGAGGTGGACGCCACCGAGCTGGCCCGCAGCCAGGAGTCGCTCACGGCCTTCCTG
CACCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACATGGCCGCGCTGCGCTTTCTCATCGAATCGCTGAACGACGA
CGGCTACCTGGACGAGTCGCTGCAGGACCTGGCCGCCAGCCTGGCGGGCACCGAAGAACCCGAGCAACTCGATGAACTGG
TGCACCGTTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGCGGGCGTGGGCGCGCGCGGCCTGGCCGAATGC
CTCACGCTGCAGCTGCGTGCGATGGACCAGGACGAAGAGGGCGACCCCGACGTGATCCAGGCCGCGCTGGCCATCTGCGG
CCAGCCGCTGGACCTGCTGGCCAAGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCACCAGCGAAGAGCGCACGCGTG
CCGCGATGGTCTTGATCGCGCGGCTGGAGCCACGCCCGGGCAGGCGCTTTGCCGACGTGGACCGCAACATCATCGTGCCC
GACGTGATCGTCAAGAAAACCGGCCGCGGCGGACAGCAGAACTTCAGCGTGCAGCTCAACCCGGACGTGATGCCGCGTCT
GCGCGTGCACGACATCTACGCCGGTGCGTTGCGCGGCGGCCGTGGCGAAGGCCACCAGGCGCTGCAGGCACGGCTGCAGG
AGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAG
AAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGATGAACTGGGCCTGCACGA
GTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCTACGCCGCAAGGCACCTACGAACTCAAGTATTTCTTCGGCT
CGGGGCTGGGCACCGAAACCGGCGGCAACGCCTCCAGCACGGCCGTGCGCGCGCTCATCAAGCAGTTCATCGCGGCCGAG
AACCCGCACAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATTGAATGTGCGCGCCGCACCGT
GGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTCCGCAAGGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(367-523)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.232

100

0.533

Multiple sequence alignment