Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A6J82_RS01845 Genome accession   NZ_CP020449
Coordinates   325063..325824 (-) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 320063..330824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS01820 (A6J82_01845) purC 320414..321118 (-) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  A6J82_RS01825 (A6J82_01850) - 321242..321481 (-) 240 WP_000085641.1 phosphopantetheine-binding protein -
  A6J82_RS01830 (A6J82_01855) plsX 321492..322484 (-) 993 WP_000717409.1 phosphate acyltransferase PlsX -
  A6J82_RS01835 (A6J82_01860) - 322562..323440 (-) 879 WP_000420130.1 CPBP family intramembrane glutamic endopeptidase -
  A6J82_RS01840 (A6J82_01865) - 323458..324930 (-) 1473 WP_041325923.1 IS1182 family transposase -
  A6J82_RS01845 (A6J82_01870) recO 325063..325824 (-) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  A6J82_RS01850 (A6J82_01875) - 325814..326989 (-) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  A6J82_RS01855 (A6J82_01880) - 327097..328065 (-) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  A6J82_RS01860 (A6J82_01885) - 328189..329526 (-) 1338 WP_000746075.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=186499 A6J82_RS01845 WP_001266269.1 325063..325824(-) (recO) [Streptococcus agalactiae strain FDAARGOS_254]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=186499 A6J82_RS01845 WP_001266269.1 325063..325824(-) (recO) [Streptococcus agalactiae strain FDAARGOS_254]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628

Multiple sequence alignment