Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A6J72_RS09060 Genome accession   NZ_CP020433
Coordinates   1799087..1801321 (+) Length   744 a.a.
NCBI ID   WP_082312287.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794087..1806321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS09030 (A6J72_09005) - 1794864..1795493 (+) 630 WP_082312281.1 cystathionine beta-lyase -
  A6J72_RS09035 (A6J72_09010) rnz 1795504..1796433 (+) 930 WP_082312282.1 ribonuclease Z -
  A6J72_RS09040 (A6J72_09015) - 1796479..1797087 (+) 609 WP_082312283.1 histidine phosphatase family protein -
  A6J72_RS09045 (A6J72_09020) - 1797097..1797852 (+) 756 WP_082312284.1 SDR family oxidoreductase -
  A6J72_RS09050 (A6J72_09025) - 1797862..1798578 (+) 717 WP_082312285.1 class I SAM-dependent methyltransferase -
  A6J72_RS09055 (A6J72_09030) - 1798581..1798988 (+) 408 WP_082312286.1 GNAT family N-acetyltransferase -
  A6J72_RS09060 (A6J72_09035) recJ 1799087..1801321 (+) 2235 WP_082312287.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A6J72_RS09065 (A6J72_09720) - 1801458..1801780 (-) 323 Protein_1730 ATP-binding cassette domain-containing protein -
  A6J72_RS09070 (A6J72_09045) - 1801793..1802007 (-) 215 Protein_1731 GntR family transcriptional regulator -
  A6J72_RS09075 (A6J72_09050) - 1802139..1805240 (+) 3102 WP_082312288.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83591.41 Da        Isoelectric Point: 4.4421

>NTDB_id=186472 A6J72_RS09060 WP_082312287.1 1799087..1801321(+) (recJ) [Streptococcus intermedius strain FDAARGOS_233]
MITSKYDWQIATNFSDEDFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDQLYDPYELHDMEKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
DERKEMVQHIYDEAKFMIDPEKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLDASRLEELSQVLTAYIENNQLDLSTKNALFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNARLPENVPILRFSEEIPDLGNSRSVVVYDVPNQLEQLKMIIQQGHFEAIYFKNEIAHPYYLTGFGTRAQ
FAKLYKTIYQFPEFDIRYKLKKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSHIYQELKKIVKE
QELMALGTVQEIYDYLMEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=186472 A6J72_RS09060 WP_082312287.1 1799087..1801321(+) (recJ) [Streptococcus intermedius strain FDAARGOS_233]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGACTTTATCAAACAAGCTCAAAAACTCGG
CTTGGAACCTTCGGTAGCCAATTTGGTATACCAGAGAGGGATTCAGACAGAAGAAGCACTGCGAGACTTTCTAGAAGCTA
GTTTGGACCAGCTGTATGATCCTTATGAATTGCATGATATGGAGAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAC
TATGAGCAGATTTTGATCTATGGCGATTATGATGCAGATGGGATGACTTCAGCTTCTATTGTTAAAGAAGCGTTAGAACA
ATTGGGAGCGGAGTGTCAAGTCTATTTACCCAATCGATTTACAGATGGTTATGGACCTAATGCTAGTGTTTACAAGTATT
TTATTGAAAATCAAGAAGTCTCACTCATTATTACAGTGGACAATGGTGTTGCAGGACATGAAGCAATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCGTAACAGATCACCACTCTATGCCCGAGGAGCTGCCAAATGCCTATGCTATCGTCCATCC
GGAACATAGCGGAGCAGATTACCCTTTCAAGCATCTGGCTGGCTGTGGGGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAGTGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTATCTATTTTGAAAAACACTCAGCGCATCGGCTTGCAAGAACTTTTTAAGATTTCGGGCAT
TCAGGAAGATGAAGTAGATGAAGAAATAGTTGGTTTTCAGATAGCTCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CAAATCCTGCTATTGAACTTCTGACCGGTTTTGATGAAGAAGAAGCGCGTGACATCGCCCTGATGATTAATCAGAAAAAT
GACGAACGAAAGGAGATGGTGCAGCATATTTATGATGAAGCTAAGTTTATGATTGATCCTGAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGCTGCATCAGCCGATTATCG
TGTTGAATATTGAAAATGGTTTAGCAAAAGGTAGTGCTCGCAGCATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCTGGGGCAGCTGGCATGACTCTTGACGCCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGACGGCCTATATTGAAAATAATCAGCTGGATTTGTCTACTAAGAATGCCCTTTTTTTGGATGAAGAAC
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATGGATAATAAAAAGCCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTACCATGGGGGCAGGAAATGCTCACCTGAAACTAAAAATTTC
TCAGGCTGATGTTGCTTTTGATGTAATAGCTTTTGGACAAGGCGAACTTGCCACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAATGGAATGGTCAGACTAGTCTGCAACTTATGTTGGTAGACGCTCGAGTCAAC
GGAATTCAGCTCTTTAATATTCGAGGTAAAAATGCTCGCTTACCTGAAAATGTACCTATTCTGCGTTTTTCAGAAGAAAT
ACCTGATTTGGGAAATAGTAGATCAGTTGTGGTCTATGACGTCCCCAATCAACTAGAACAACTAAAAATGATTATTCAAC
AAGGACATTTTGAAGCCATTTACTTTAAAAATGAGATTGCTCACCCCTATTATCTGACAGGTTTTGGAACGAGAGCCCAA
TTTGCCAAACTCTATAAAACGATTTATCAGTTTCCGGAGTTTGATATACGTTATAAACTAAAAAAATTGGCTGCTTATCT
CAACATTGATTCAATTCTACTCATAAAGATGATTCAAATTTTTGAAGAACTGGGTTTTGTAACGGTTCAAGATGGAGTGA
TGCGAGTTAACAAGGAAGCAGAAAAAAAAGCGATTGAGAGTAGCCATATTTATCAAGAACTCAAAAAAATAGTCAAGGAG
CAGGAGCTGATGGCTCTAGGAACTGTTCAAGAAATTTATGATTATCTGATGGAAAAGGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(318-434)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

74.595

99.462

0.742
  recJ Bacillus subtilis subsp. subtilis str. 168

37.953

100

0.394