Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   A6J72_RS08750 Genome accession   NZ_CP020433
Coordinates   1732134..1735406 (+) Length   1090 a.a.
NCBI ID   WP_082312252.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727134..1740406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS08720 (A6J72_08695) - 1727415..1727828 (+) 414 WP_082312250.1 hypothetical protein -
  A6J72_RS08725 (A6J72_08700) - 1727812..1729050 (+) 1239 WP_225791027.1 triacylglycerol lipase -
  A6J72_RS08730 (A6J72_08705) - 1729032..1729433 (+) 402 WP_009569042.1 hypothetical protein -
  A6J72_RS08735 (A6J72_08710) - 1729411..1729704 (+) 294 WP_020998416.1 hypothetical protein -
  A6J72_RS08740 (A6J72_08715) - 1729908..1730801 (+) 894 WP_003072123.1 ABC transporter ATP-binding protein -
  A6J72_RS08745 (A6J72_08720) - 1730798..1732012 (+) 1215 WP_003076401.1 ABC transporter permease -
  A6J72_RS08750 (A6J72_08725) rexB 1732134..1735406 (+) 3273 WP_082312252.1 ATP-dependent nuclease subunit B Machinery gene
  A6J72_RS08755 (A6J72_08730) rexA 1735403..1739083 (+) 3681 WP_082312253.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125406.67 Da        Isoelectric Point: 5.3008

>NTDB_id=186467 A6J72_RS08750 WP_082312252.1 1732134..1735406(+) (rexB) [Streptococcus intermedius strain FDAARGOS_233]
MKLLYTDIRNPLTTILVKEAERLAQKGKRVFYIAPNSLSFEKERVVLSQLTHQASFAITVTRFTQMARYFVLNDIQQGSP
LDDIGLGMLFYKVLSEMDEKDLRVYGGIRTDAQFIQQLVELYHELQSAQMTFTDLEHLEEDEKKVDFIKILQAVTQQINQ
SEFSSESNIMTFANHIMTGDVDKELQDLVLVIDGFTRFSAEEAYLVELLHSKGVEIVIGVYASEKAYRTSFREGNLYQAS
VDFLRYLADKYEVKPEHRLATPLDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLNQE
ELDLFEQYICFADIKGMGKFSKDFTHNQHQKFDLIRINHLRKEIVIPLLDFLKSRSQTAMGLLQNFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFAASKIKLDDFLTLVQSGMLLSNYRTVPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEDRLLLNEATGEHSELVIATQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRGLLARIIELNQGEIDKERSLTDKDQTFWAVAVRVLRKKLENEGVSIPN
VTSSLETETLSDQTLQVLYPPHQVFLLSTSALTEFYRNQYAYFLKYVLALQDEMTIHPDARSHGNFLHRVFEKVMQASSS
EQFDYRLEKAIQETSQEAEFKAIYTENAVALFAHEVLLDTARATGLVLEKNDLVDTIQEEAVFGQEDVNFLSLSDGRKLQ
IRGKVDRIDRLRSNNSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQEKWVDDGTQLFGAMYLQMANPLVPLAKTK
SYDDTVKEAMKIMEYKGLFLSDQAHQLNNLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSRARHLVKLDKHSAGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=186467 A6J72_RS08750 WP_082312252.1 1732134..1735406(+) (rexB) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACAACGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAGAAAGG
TAAGCGCGTGTTTTATATTGCTCCTAACTCTCTTTCATTTGAAAAGGAGAGAGTAGTTTTAAGCCAGCTCACTCATCAAG
CGTCCTTTGCTATTACAGTGACGCGTTTTACCCAGATGGCACGCTATTTTGTCCTCAATGATATACAGCAAGGTAGCCCA
TTAGATGATATTGGTCTGGGAATGTTATTTTACAAAGTCTTGTCAGAAATGGATGAGAAGGACTTGCGAGTGTATGGCGG
TATTCGCACGGATGCACAATTTATTCAGCAGTTGGTTGAACTTTATCATGAGTTGCAGAGTGCTCAGATGACGTTCACGG
ATTTGGAACATCTGGAAGAAGATGAGAAGAAAGTAGATTTCATCAAGATTTTGCAGGCTGTTACACAGCAGATCAATCAG
AGTGAGTTTAGTTCTGAATCAAATATTATGACCTTTGCCAATCATATAATGACAGGTGATGTAGATAAGGAATTGCAAGA
TTTAGTCTTGGTGATTGATGGCTTTACGCGTTTTTCTGCTGAGGAAGCCTACTTGGTTGAGCTACTGCATAGCAAGGGAG
TGGAAATTGTTATTGGTGTTTATGCAAGCGAAAAAGCATACCGTACAAGTTTTCGAGAGGGAAATCTCTATCAAGCTAGT
GTAGATTTCTTACGCTATTTGGCAGATAAATATGAAGTGAAGCCTGAGCATAGACTAGCAACACCATTAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACAGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTGGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAATTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTCTATGGTCATTTAAACCAAGAA
GAGTTAGACTTGTTTGAGCAATATATCTGCTTTGCAGATATAAAAGGAATGGGTAAGTTTTCTAAGGATTTTACTCACAA
TCAACATCAAAAATTTGATCTCATTCGCATCAATCACTTAAGAAAAGAAATAGTCATTCCTCTTTTGGATTTTTTAAAAT
CTCGTAGTCAAACAGCAATGGGGTTACTTCAAAACTTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
GTTTGCCAGTGTCTTTGCAGCCAGCAAGATTAAGCTAGATGATTTTTTGACCTTGGTGCAGTCGGGAATGCTGTTATCTA
ATTATCGGACTGTTCCAGCAACAGTAGATGTCGTAACTGTTCAGTCTTATGATTTAATTGAGCCTTTGTCGAGTCCTTTT
GTCTATGCTATTGGTTTGACCCAAGATTATTTTCCAAAAATTGTCCAAAATAAGAGTCTTTTATCAGATGAAGATCGTTT
ATTGTTAAATGAAGCGACAGGTGAGCACTCAGAATTGGTGATTGCTACTCAGGAAAATCTTAAGAAAAATCGTTTTGTTG
CCTTGTCACTGTTGAATGCGGCAACAGACAGATTAGTTCTCTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTACATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGCCCACAGGCAACGAGTGATGA
TATTGGTACTTACCGCGGTTTATTGGCAAGGATTATTGAATTAAATCAAGGAGAGATTGACAAAGAGCGTTCTTTGACTG
ATAAAGACCAGACTTTTTGGGCAGTTGCCGTACGAGTTTTGCGCAAAAAATTAGAAAATGAAGGTGTTTCGATTCCTAAT
GTAACATCAAGTCTTGAAACAGAGACTTTGTCAGATCAGACCTTACAGGTTCTTTATCCACCTCATCAAGTATTTTTACT
ATCAACTTCAGCCTTGACAGAATTCTATCGTAATCAGTATGCTTATTTTTTGAAGTATGTCCTAGCTCTACAAGATGAAA
TGACGATCCATCCAGATGCGCGCAGTCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGCTTCATCAAGT
GAGCAGTTTGATTATCGGCTAGAAAAAGCTATTCAAGAAACGAGCCAGGAAGCGGAATTTAAAGCGATTTATACTGAAAA
TGCAGTAGCTTTATTTGCGCATGAAGTGTTGCTTGATACGGCGCGTGCAACAGGGCTTGTTTTAGAAAAAAATGATTTGG
TAGATACTATTCAAGAAGAAGCAGTTTTTGGACAAGAAGATGTGAACTTTTTAAGCTTATCAGATGGACGTAAGCTTCAA
ATTCGCGGGAAAGTTGACCGAATTGACCGATTGAGGAGTAATAACAGTTTAGGAATTGTAGATTATAAATCAAGTGATAC
GAATTTTGATTTTCAAAAATTTTTTAATGGCTTAAATTCTCAATTGCCAACCTATCTAGCGGCATTGAAGCAAGAAAAGT
GGGTAGATGATGGTACGCAGCTTTTTGGAGCTATGTATTTACAGATGGCTAACCCACTTGTGCCTTTAGCTAAAACGAAG
TCATACGATGATACGGTCAAAGAAGCGATGAAAATTATGGAATATAAGGGCTTGTTTTTATCTGATCAAGCTCATCAGCT
CAATAACTTGTATAATAAAAAGAAAGTTAATTTGTTAAGTCAAGAAGAACTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCAGATATTGGCAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCGATTACGGGCTTTGAAGCCAATCTTCACCTTTCTAGAGCCCGACATTTGGTTAAGCT
AGATAAGCACTCAGCAGGTGAAAAAAAACGTCAAGCGTGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

56.142

100

0.566