Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   A6J72_RS06590 Genome accession   NZ_CP020433
Coordinates   1311033..1311359 (+) Length   108 a.a.
NCBI ID   WP_263969846.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306033..1316359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS06555 (A6J72_06565) - 1307325..1307690 (+) 366 WP_003075933.1 DUF1033 family protein -
  A6J72_RS06560 (A6J72_06570) comGA 1307759..1308700 (+) 942 WP_003073980.1 competence type IV pilus ATPase ComGA Machinery gene
  A6J72_RS06565 (A6J72_06575) comGB 1308642..1309664 (+) 1023 WP_192573659.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6J72_RS06570 (A6J72_06580) comGC 1309661..1309978 (+) 318 WP_082312041.1 competence type IV pilus major pilin ComGC Machinery gene
  A6J72_RS06575 (A6J72_06585) comGD 1309938..1310366 (+) 429 WP_037582814.1 competence type IV pilus minor pilin ComGD Machinery gene
  A6J72_RS06580 (A6J72_06590) comGE/cglE 1310338..1310631 (+) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  A6J72_RS06585 (A6J72_06595) comGF/cglF 1310615..1311052 (+) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6J72_RS06590 (A6J72_06600) comGG/cglG 1311033..1311359 (+) 327 WP_263969846.1 competence type IV pilus minor pilin ComGG Machinery gene
  A6J72_RS06595 (A6J72_06605) comGH 1311450..1312403 (+) 954 WP_105255939.1 class I SAM-dependent methyltransferase Machinery gene
  A6J72_RS06600 (A6J72_06610) - 1312450..1313649 (+) 1200 WP_021003254.1 acetate kinase -
  A6J72_RS06605 (A6J72_06615) glmS 1314039..1315853 (+) 1815 WP_082312042.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12910.91 Da        Isoelectric Point: 10.6199

>NTDB_id=186440 A6J72_RS06590 WP_263969846.1 1311033..1311359(+) (comGG/cglG) [Streptococcus intermedius strain FDAARGOS_233]
MWKQKVKAGIMLHALFMIAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANEDSRHREFDKGHVQDQQGEKELIL
TVTMKTGRHYQFRFPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=186440 A6J72_RS06590 WP_263969846.1 1311033..1311359(+) (comGG/cglG) [Streptococcus intermedius strain FDAARGOS_233]
GTGTGGAAACAAAAAGTTAAAGCAGGTATTATGCTCCATGCCCTTTTTATGATAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAACCGAGAACGACTACAGGCGTATGCAATGGCAGTTA
TCGCAAACGAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGATCAACAAGGAGAGAAAGAGCTCATTCTG
ACAGTAACAATGAAGACAGGTCGCCATTATCAATTTCGTTTTCCGTTTGAGAAGACCAAACTAACCAATGACAATCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

47.525

93.519

0.444
  comGG/cglG Streptococcus mitis SK321

43.564

93.519

0.407
  comGG/cglG Streptococcus pneumoniae Rx1

42

92.593

0.389
  comGG/cglG Streptococcus pneumoniae D39

42

92.593

0.389
  comGG/cglG Streptococcus pneumoniae R6

42

92.593

0.389
  comGG/cglG Streptococcus pneumoniae TIGR4

42

92.593

0.389

Multiple sequence alignment