Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A6J72_RS05195 Genome accession   NZ_CP020433
Coordinates   1056204..1056977 (-) Length   257 a.a.
NCBI ID   WP_082311941.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051204..1061977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS05180 (A6J72_05195) purC 1054115..1054822 (-) 708 WP_082311939.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  A6J72_RS05185 (A6J72_05200) - 1054967..1055212 (-) 246 WP_003075134.1 acyl carrier protein -
  A6J72_RS05190 (A6J72_05205) plsX 1055209..1056207 (-) 999 WP_082311940.1 phosphate acyltransferase PlsX -
  A6J72_RS05195 (A6J72_05210) recO 1056204..1056977 (-) 774 WP_082311941.1 DNA repair protein RecO Machinery gene
  A6J72_RS05200 (A6J72_05215) - 1056955..1058142 (-) 1188 WP_082311942.1 pyridoxal phosphate-dependent aminotransferase -
  A6J72_RS05205 (A6J72_05220) - 1058306..1059274 (-) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  A6J72_RS05210 (A6J72_05225) pcsB 1059408..1060589 (-) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  A6J72_RS05215 (A6J72_05230) mreD 1060699..1061199 (-) 501 WP_003075140.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30109.64 Da        Isoelectric Point: 5.6003

>NTDB_id=186417 A6J72_RS05195 WP_082311941.1 1056204..1056977(-) (recO) [Streptococcus intermedius strain FDAARGOS_233]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFNDLKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGEILKNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=186417 A6J72_RS05195 WP_082311941.1 1056204..1056977(-) (recO) [Streptococcus intermedius strain FDAARGOS_233]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTCTGG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAATGACCTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATCTTAAAGAACAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

73.333

99.222

0.728