Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6J72_RS01295 Genome accession   NZ_CP020433
Coordinates   250643..252391 (-) Length   582 a.a.
NCBI ID   WP_082311573.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 245643..257391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS01280 (A6J72_01280) - 245698..247875 (+) 2178 WP_082311570.1 ABC transporter substrate-binding protein/permease -
  A6J72_RS01285 (A6J72_01285) - 247875..248615 (+) 741 WP_082311571.1 amino acid ABC transporter ATP-binding protein -
  A6J72_RS01290 (A6J72_01290) - 248990..250525 (+) 1536 WP_082311572.1 ATP-binding cassette domain-containing protein -
  A6J72_RS01295 (A6J72_01295) rcrQ 250643..252391 (-) 1749 WP_082311573.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS01300 (A6J72_01300) - 252381..254117 (-) 1737 WP_082311574.1 ABC transporter ATP-binding protein -
  A6J72_RS01305 (A6J72_01305) - 254333..255130 (-) 798 WP_009568535.1 formate/nitrite transporter family protein -
  A6J72_RS01310 (A6J72_01310) - 255306..256013 (-) 708 WP_082311575.1 glucosaminidase domain-containing protein -
  A6J72_RS01315 (A6J72_01315) yihA 256136..256723 (-) 588 WP_003072916.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65174.66 Da        Isoelectric Point: 7.9271

>NTDB_id=186380 A6J72_RS01295 WP_082311573.1 250643..252391(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
MKIRYSTSRLKRLANDLLQQRWLFLLATVGTIVQVVLTIYLPILIGEAIDSVLFPDAGRYLLPILSKMGIVIVANAVVQW
LNPLIYNQLIYSYSQQLRNAVIQKIHHLPLAYLDRQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMAKI
DFFMMALVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIANFTKGNESYADYSQE
AIFYSSTVNPATRFVNALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYTIL
DEKELVEIGKEELTSETVFGAIRFEHICFGYEKNKPLIHDLNMTIPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRVSFRRQFGMVLQETWLKKTTIHDNIAFGRPEASREEVIAAAKAANAHFFIQQLPNGYDTYLANAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEVLIQKAFNKLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QDLMQAKGMYYQMQTAQGSLAI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=186380 A6J72_RS01295 WP_082311573.1 250643..252391(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAAATTAGATATTCTACAAGTAGGTTGAAGCGTCTAGCTAATGATTTATTGCAACAACGTTGGCTTTTTCTGTTAGC
CACAGTTGGAACGATTGTTCAAGTTGTTTTGACAATTTATTTGCCGATTTTGATTGGCGAGGCTATTGATAGTGTTTTAT
TTCCTGATGCTGGTCGATATTTGCTTCCAATTCTTTCAAAAATGGGGATTGTAATTGTTGCCAATGCAGTAGTTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGCAACTTCGTAATGCTGTCATTCAAAAAATTCATCA
TCTTCCCTTGGCTTATCTTGATCGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACAACGGATGTGGAGCAGTTAAATA
ATGGGTTGCTCATGGTTTTTAATCAATTTTTTGTAGGTGTACTGACTATTCTTGTAACAATTGTGACAATGGCAAAGATT
GACTTTTTCATGATGGCATTGGTCTTGCTATTAACTCCCTTATCTATGCTGATTGCGGATTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAAGAGCAGTTCATTGCGAACTTTACAAAGGGGAATGAAAGCTATGCGGATTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAACCCAGCAACGCGTTTTGTAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATCATCAACGGTTCCAGTTTTACAGTTGGACAATTAGTAACTTTCTTAAATTATGTGAACCAATATACTA
AACCATTTAACGACATTTCGTCTGTCATGGCCGAATTACAAAGCGCCCTTGCTTGTGCAGAACGCTTGTACACGATTTTA
GATGAAAAGGAACTTGTAGAAATTGGAAAAGAAGAACTTACGAGTGAGACCGTCTTTGGAGCTATTCGTTTTGAACATAT
ATGTTTTGGTTATGAAAAAAACAAGCCCTTGATTCACGATTTAAATATGACGATTCCTGCGGGAAGCAAAGTTGCTATTG
TTGGGCCAACTGGCGCAGGAAAGTCTACCTTGATCAATCTTCTGATGCGCTTTTATAATGTAGATGCGGGCAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAGTGTCCTTCCGCCGGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACCACGATCCATGATAATATTGCTTTTGGGCGACCAGAAGCGAGTCGAGAAGAAGTGATAGCAGCTGCTAAAG
CAGCGAATGCACATTTTTTTATTCAGCAATTACCGAATGGTTATGACACTTATCTAGCGAACGCAGGTGACTCTTTATCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTTCTAGCTGTACCTAAAATCTTAATTTTAGACGAAGCAACTTC
ATCCATTGATACACGAACCGAAGTGCTTATTCAAAAAGCTTTTAATAAGCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGCAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGACTTGATGCAAGCGAAAGGTATGTATTATCAAATGCAGACAGCGCAGGGAAGTTTGGCTATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.619

99.313

0.393

Multiple sequence alignment